Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0837

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0835 and EX28DRAFT_0836 are separated by 270 nucleotidesEX28DRAFT_0836 and EX28DRAFT_0837 are separated by 177 nucleotidesEX28DRAFT_0837 and EX28DRAFT_0838 are separated by 30 nucleotidesEX28DRAFT_0838 and EX28DRAFT_0839 are separated by 211 nucleotides EX28DRAFT_0835: EX28DRAFT_0835 - calcium/proton exchanger, at 838,683 to 839,783 _0835 EX28DRAFT_0836: EX28DRAFT_0836 - Putative cation transport regulator, at 840,054 to 840,284 _0836 EX28DRAFT_0837: EX28DRAFT_0837 - Uncharacterized protein involved in cation transport, at 840,462 to 841,157 _0837 EX28DRAFT_0838: EX28DRAFT_0838 - Domain of unknown function (DUF1883), at 841,188 to 841,427 _0838 EX28DRAFT_0839: EX28DRAFT_0839 - Methyl-accepting chemotaxis protein, at 841,639 to 843,423 _0839 Position (kb) 840 841 842Strain fitness (log2 ratio) -2 -1 0 1 2at 839.533 kb on - strand, within EX28DRAFT_0835at 839.559 kb on + strand, within EX28DRAFT_0835at 839.559 kb on + strand, within EX28DRAFT_0835at 839.559 kb on + strand, within EX28DRAFT_0835at 839.654 kb on + strand, within EX28DRAFT_0835at 839.655 kb on - strand, within EX28DRAFT_0835at 839.655 kb on - strand, within EX28DRAFT_0835at 839.661 kb on - strand, within EX28DRAFT_0835at 840.122 kb on + strand, within EX28DRAFT_0836at 840.123 kb on - strand, within EX28DRAFT_0836at 840.159 kb on + strand, within EX28DRAFT_0836at 840.160 kb on - strand, within EX28DRAFT_0836at 840.264 kb on - strandat 840.264 kb on - strandat 840.282 kb on + strandat 840.282 kb on + strandat 840.367 kb on - strandat 840.421 kb on + strandat 840.421 kb on + strandat 840.422 kb on - strandat 840.497 kb on + strandat 840.858 kb on + strand, within EX28DRAFT_0837at 840.858 kb on + strand, within EX28DRAFT_0837at 840.858 kb on + strand, within EX28DRAFT_0837at 840.859 kb on - strand, within EX28DRAFT_0837at 840.859 kb on - strand, within EX28DRAFT_0837at 840.859 kb on - strand, within EX28DRAFT_0837at 840.861 kb on - strand, within EX28DRAFT_0837at 840.920 kb on + strand, within EX28DRAFT_0837at 840.946 kb on - strand, within EX28DRAFT_0837at 841.023 kb on + strand, within EX28DRAFT_0837at 841.183 kb on + strandat 841.202 kb on - strandat 841.202 kb on - strandat 841.353 kb on - strand, within EX28DRAFT_0838at 841.416 kb on + strandat 841.417 kb on - strandat 841.432 kb on + strandat 841.433 kb on - strandat 841.508 kb on - strandat 841.594 kb on + strandat 841.746 kb on + strandat 841.828 kb on - strand, within EX28DRAFT_0839at 841.892 kb on + strand, within EX28DRAFT_0839at 841.996 kb on + strand, within EX28DRAFT_0839at 842.081 kb on - strand, within EX28DRAFT_0839at 842.081 kb on - strand, within EX28DRAFT_0839

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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839,533 - EX28DRAFT_0835 0.77 -0.2
839,559 + EX28DRAFT_0835 0.80 +0.5
839,559 + EX28DRAFT_0835 0.80 +2.4
839,559 + EX28DRAFT_0835 0.80 +0.0
839,654 + EX28DRAFT_0835 0.88 +0.6
839,655 - EX28DRAFT_0835 0.88 +0.7
839,655 - EX28DRAFT_0835 0.88 -2.1
839,661 - EX28DRAFT_0835 0.89 +0.0
840,122 + EX28DRAFT_0836 0.29 +0.3
840,123 - EX28DRAFT_0836 0.30 -0.1
840,159 + EX28DRAFT_0836 0.45 +0.8
840,160 - EX28DRAFT_0836 0.46 +0.0
840,264 - -1.4
840,264 - -0.6
840,282 + +0.1
840,282 + +0.2
840,367 - +0.1
840,421 + -0.2
840,421 + -0.5
840,422 - +0.4
840,497 + -0.3
840,858 + EX28DRAFT_0837 0.57 -0.4
840,858 + EX28DRAFT_0837 0.57 +0.4
840,858 + EX28DRAFT_0837 0.57 +0.9
840,859 - EX28DRAFT_0837 0.57 -0.1
840,859 - EX28DRAFT_0837 0.57 +0.1
840,859 - EX28DRAFT_0837 0.57 +0.7
840,861 - EX28DRAFT_0837 0.57 -0.4
840,920 + EX28DRAFT_0837 0.66 +0.5
840,946 - EX28DRAFT_0837 0.70 +1.8
841,023 + EX28DRAFT_0837 0.81 -0.4
841,183 + -0.8
841,202 - -0.2
841,202 - -0.5
841,353 - EX28DRAFT_0838 0.69 +1.9
841,416 + +0.3
841,417 - -0.3
841,432 + -0.1
841,433 - -1.4
841,508 - +0.4
841,594 + -1.3
841,746 + -0.0
841,828 - EX28DRAFT_0839 0.11 -0.6
841,892 + EX28DRAFT_0839 0.14 +0.5
841,996 + EX28DRAFT_0839 0.20 -0.1
842,081 - EX28DRAFT_0839 0.25 -0.4
842,081 - EX28DRAFT_0839 0.25 +0.5

Or see this region's nucleotide sequence