Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0798

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0796 and EX28DRAFT_0797 are separated by 179 nucleotidesEX28DRAFT_0797 and EX28DRAFT_0798 are separated by 57 nucleotidesEX28DRAFT_0798 and EX28DRAFT_0799 overlap by 4 nucleotidesEX28DRAFT_0799 and EX28DRAFT_0800 are separated by 82 nucleotides EX28DRAFT_0796: EX28DRAFT_0796 - hypothetical protein, at 797,425 to 797,844 _0796 EX28DRAFT_0797: EX28DRAFT_0797 - Hemolysin-coregulated protein (uncharacterized), at 798,024 to 798,506 _0797 EX28DRAFT_0798: EX28DRAFT_0798 - hypothetical protein, at 798,564 to 799,106 _0798 EX28DRAFT_0799: EX28DRAFT_0799 - hypothetical protein, at 799,103 to 799,504 _0799 EX28DRAFT_0800: EX28DRAFT_0800 - FHA domain protein, at 799,587 to 801,350 _0800 Position (kb) 798 799 800Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 797.655 kb on + strand, within EX28DRAFT_0796at 797.656 kb on - strand, within EX28DRAFT_0796at 797.759 kb on - strand, within EX28DRAFT_0796at 797.759 kb on - strand, within EX28DRAFT_0796at 797.802 kb on - strand, within EX28DRAFT_0796at 797.842 kb on + strandat 797.884 kb on + strandat 797.933 kb on - strandat 797.933 kb on - strandat 797.974 kb on - strandat 797.975 kb on + strandat 797.975 kb on + strandat 797.996 kb on + strandat 798.017 kb on - strandat 798.020 kb on + strandat 798.021 kb on - strandat 798.024 kb on - strandat 798.035 kb on + strandat 798.102 kb on - strand, within EX28DRAFT_0797at 798.102 kb on - strand, within EX28DRAFT_0797at 798.104 kb on + strand, within EX28DRAFT_0797at 798.104 kb on + strand, within EX28DRAFT_0797at 798.105 kb on - strand, within EX28DRAFT_0797at 798.105 kb on - strand, within EX28DRAFT_0797at 798.105 kb on - strand, within EX28DRAFT_0797at 798.140 kb on + strand, within EX28DRAFT_0797at 798.141 kb on - strand, within EX28DRAFT_0797at 798.141 kb on - strand, within EX28DRAFT_0797at 798.309 kb on + strand, within EX28DRAFT_0797at 798.309 kb on + strand, within EX28DRAFT_0797at 798.310 kb on - strand, within EX28DRAFT_0797at 798.393 kb on + strand, within EX28DRAFT_0797at 798.393 kb on + strand, within EX28DRAFT_0797at 798.393 kb on + strand, within EX28DRAFT_0797at 798.394 kb on - strand, within EX28DRAFT_0797at 798.394 kb on - strand, within EX28DRAFT_0797at 798.394 kb on - strand, within EX28DRAFT_0797at 798.504 kb on + strandat 798.505 kb on - strandat 798.512 kb on + strandat 798.512 kb on + strandat 798.512 kb on + strandat 798.512 kb on + strandat 798.512 kb on + strandat 798.560 kb on + strandat 798.560 kb on + strandat 798.561 kb on - strandat 798.561 kb on - strandat 798.613 kb on + strandat 798.647 kb on - strand, within EX28DRAFT_0798at 798.674 kb on + strand, within EX28DRAFT_0798at 798.693 kb on - strand, within EX28DRAFT_0798at 798.695 kb on + strand, within EX28DRAFT_0798at 798.791 kb on + strand, within EX28DRAFT_0798at 798.791 kb on + strand, within EX28DRAFT_0798at 798.823 kb on + strand, within EX28DRAFT_0798at 798.823 kb on + strand, within EX28DRAFT_0798at 798.823 kb on + strand, within EX28DRAFT_0798at 798.824 kb on - strand, within EX28DRAFT_0798at 798.824 kb on - strand, within EX28DRAFT_0798at 798.888 kb on - strand, within EX28DRAFT_0798at 798.967 kb on - strand, within EX28DRAFT_0798at 799.044 kb on - strand, within EX28DRAFT_0798at 799.048 kb on - strand, within EX28DRAFT_0798at 799.057 kb on + strandat 799.058 kb on - strandat 799.058 kb on - strandat 799.083 kb on - strandat 799.502 kb on + strandat 799.502 kb on + strandat 799.503 kb on - strandat 799.503 kb on - strandat 799.564 kb on - strandat 799.570 kb on - strandat 799.582 kb on - strandat 799.602 kb on - strandat 799.607 kb on + strandat 799.802 kb on - strand, within EX28DRAFT_0800at 799.804 kb on + strand, within EX28DRAFT_0800at 799.804 kb on + strand, within EX28DRAFT_0800at 799.805 kb on - strand, within EX28DRAFT_0800

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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797,655 + EX28DRAFT_0796 0.55 -0.7
797,656 - EX28DRAFT_0796 0.55 +0.8
797,759 - EX28DRAFT_0796 0.80 -1.5
797,759 - EX28DRAFT_0796 0.80 -0.2
797,802 - EX28DRAFT_0796 0.90 -0.4
797,842 + +0.2
797,884 + +0.3
797,933 - +0.2
797,933 - +0.8
797,974 - +0.6
797,975 + +0.6
797,975 + -0.9
797,996 + +0.1
798,017 - +1.0
798,020 + +0.2
798,021 - +0.6
798,024 - +1.4
798,035 + +0.4
798,102 - EX28DRAFT_0797 0.16 -1.9
798,102 - EX28DRAFT_0797 0.16 +0.4
798,104 + EX28DRAFT_0797 0.17 +0.2
798,104 + EX28DRAFT_0797 0.17 +0.7
798,105 - EX28DRAFT_0797 0.17 +0.1
798,105 - EX28DRAFT_0797 0.17 -0.1
798,105 - EX28DRAFT_0797 0.17 +0.5
798,140 + EX28DRAFT_0797 0.24 +0.2
798,141 - EX28DRAFT_0797 0.24 +0.2
798,141 - EX28DRAFT_0797 0.24 +0.3
798,309 + EX28DRAFT_0797 0.59 +0.2
798,309 + EX28DRAFT_0797 0.59 +0.3
798,310 - EX28DRAFT_0797 0.59 -0.0
798,393 + EX28DRAFT_0797 0.76 -0.1
798,393 + EX28DRAFT_0797 0.76 -0.1
798,393 + EX28DRAFT_0797 0.76 +0.6
798,394 - EX28DRAFT_0797 0.77 -0.2
798,394 - EX28DRAFT_0797 0.77 -0.0
798,394 - EX28DRAFT_0797 0.77 +0.7
798,504 + -0.2
798,505 - +1.4
798,512 + +0.1
798,512 + +2.4
798,512 + -0.4
798,512 + +0.2
798,512 + -0.3
798,560 + -0.3
798,560 + +1.0
798,561 - -1.5
798,561 - +0.5
798,613 + +0.2
798,647 - EX28DRAFT_0798 0.15 +0.1
798,674 + EX28DRAFT_0798 0.20 -0.5
798,693 - EX28DRAFT_0798 0.24 +0.6
798,695 + EX28DRAFT_0798 0.24 +0.0
798,791 + EX28DRAFT_0798 0.42 +1.1
798,791 + EX28DRAFT_0798 0.42 +1.6
798,823 + EX28DRAFT_0798 0.48 +0.2
798,823 + EX28DRAFT_0798 0.48 -0.2
798,823 + EX28DRAFT_0798 0.48 +0.5
798,824 - EX28DRAFT_0798 0.48 +1.0
798,824 - EX28DRAFT_0798 0.48 +0.2
798,888 - EX28DRAFT_0798 0.60 -0.4
798,967 - EX28DRAFT_0798 0.74 +0.4
799,044 - EX28DRAFT_0798 0.88 +0.9
799,048 - EX28DRAFT_0798 0.89 -0.1
799,057 + -0.8
799,058 - -0.1
799,058 - +0.2
799,083 - -0.1
799,502 + +1.5
799,502 + +0.4
799,503 - -0.0
799,503 - +0.2
799,564 - +0.4
799,570 - +0.8
799,582 - -0.0
799,602 - +0.4
799,607 + -0.3
799,802 - EX28DRAFT_0800 0.12 -0.1
799,804 + EX28DRAFT_0800 0.12 -3.2
799,804 + EX28DRAFT_0800 0.12 +0.6
799,805 - EX28DRAFT_0800 0.12 +0.3

Or see this region's nucleotide sequence