Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0740

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0738 and EX28DRAFT_0739 are separated by 398 nucleotidesEX28DRAFT_0739 and EX28DRAFT_0740 are separated by 54 nucleotidesEX28DRAFT_0740 and EX28DRAFT_0741 are separated by 12 nucleotidesEX28DRAFT_0741 and EX28DRAFT_0742 are separated by 46 nucleotides EX28DRAFT_0738: EX28DRAFT_0738 - Predicted membrane protein, at 735,391 to 735,957 _0738 EX28DRAFT_0739: EX28DRAFT_0739 - Predicted membrane protein, at 736,356 to 736,814 _0739 EX28DRAFT_0740: EX28DRAFT_0740 - PTS system, mannose/fructose/sorbose family, IID component, at 736,869 to 737,720 _0740 EX28DRAFT_0741: EX28DRAFT_0741 - PTS system, mannose/fructose/sorbose family, IIC component, at 737,733 to 738,533 _0741 EX28DRAFT_0742: EX28DRAFT_0742 - PTS system, mannose/fructose/sorbose family, IIB component, at 738,580 to 739,545 _0742 Position (kb) 736 737 738Strain fitness (log2 ratio) -2 -1 0 1at 735.984 kb on + strandat 735.985 kb on - strandat 736.022 kb on + strandat 736.026 kb on + strandat 736.027 kb on - strandat 736.027 kb on - strandat 736.053 kb on + strandat 736.054 kb on - strandat 736.054 kb on - strandat 736.169 kb on - strandat 736.532 kb on + strand, within EX28DRAFT_0739at 736.593 kb on + strand, within EX28DRAFT_0739at 736.593 kb on + strand, within EX28DRAFT_0739at 736.611 kb on + strand, within EX28DRAFT_0739at 736.639 kb on + strand, within EX28DRAFT_0739at 736.649 kb on + strand, within EX28DRAFT_0739at 736.753 kb on + strand, within EX28DRAFT_0739at 736.794 kb on + strandat 736.858 kb on - strandat 736.870 kb on + strandat 736.870 kb on + strandat 736.871 kb on - strandat 737.231 kb on - strand, within EX28DRAFT_0740at 737.231 kb on - strand, within EX28DRAFT_0740at 737.491 kb on + strand, within EX28DRAFT_0740at 737.491 kb on + strand, within EX28DRAFT_0740at 737.492 kb on - strand, within EX28DRAFT_0740at 737.492 kb on - strand, within EX28DRAFT_0740at 737.612 kb on + strand, within EX28DRAFT_0740at 737.646 kb on - strandat 737.646 kb on - strandat 737.712 kb on - strandat 737.801 kb on - strandat 737.821 kb on + strand, within EX28DRAFT_0741at 737.902 kb on + strand, within EX28DRAFT_0741at 737.903 kb on - strand, within EX28DRAFT_0741at 737.964 kb on + strand, within EX28DRAFT_0741at 737.964 kb on + strand, within EX28DRAFT_0741at 737.964 kb on + strand, within EX28DRAFT_0741at 737.965 kb on - strand, within EX28DRAFT_0741at 738.045 kb on - strand, within EX28DRAFT_0741at 738.111 kb on + strand, within EX28DRAFT_0741at 738.112 kb on - strand, within EX28DRAFT_0741at 738.112 kb on - strand, within EX28DRAFT_0741at 738.186 kb on - strand, within EX28DRAFT_0741at 738.192 kb on - strand, within EX28DRAFT_0741at 738.425 kb on + strand, within EX28DRAFT_0741at 738.485 kb on + strandat 738.486 kb on - strandat 738.524 kb on + strandat 738.546 kb on - strandat 738.548 kb on + strandat 738.548 kb on + strandat 738.549 kb on - strandat 738.549 kb on - strandat 738.549 kb on - strandat 738.559 kb on + strandat 738.559 kb on + strandat 738.559 kb on + strandat 738.560 kb on - strandat 738.560 kb on - strandat 738.562 kb on - strandat 738.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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735,984 + +1.7
735,985 - -0.4
736,022 + -0.1
736,026 + -0.7
736,027 - -1.0
736,027 - -0.1
736,053 + -0.9
736,054 - -0.2
736,054 - -0.1
736,169 - -0.1
736,532 + EX28DRAFT_0739 0.38 +0.0
736,593 + EX28DRAFT_0739 0.52 -0.0
736,593 + EX28DRAFT_0739 0.52 -0.0
736,611 + EX28DRAFT_0739 0.56 -0.7
736,639 + EX28DRAFT_0739 0.62 +1.5
736,649 + EX28DRAFT_0739 0.64 +0.7
736,753 + EX28DRAFT_0739 0.86 -0.4
736,794 + +1.4
736,858 - -0.5
736,870 + -0.1
736,870 + +0.2
736,871 - +0.2
737,231 - EX28DRAFT_0740 0.42 -0.9
737,231 - EX28DRAFT_0740 0.42 +1.2
737,491 + EX28DRAFT_0740 0.73 -2.7
737,491 + EX28DRAFT_0740 0.73 -0.7
737,492 - EX28DRAFT_0740 0.73 -0.5
737,492 - EX28DRAFT_0740 0.73 +0.2
737,612 + EX28DRAFT_0740 0.87 -0.2
737,646 - -1.1
737,646 - +0.8
737,712 - -0.1
737,801 - -0.4
737,821 + EX28DRAFT_0741 0.11 -0.4
737,902 + EX28DRAFT_0741 0.21 -0.2
737,903 - EX28DRAFT_0741 0.21 -0.5
737,964 + EX28DRAFT_0741 0.29 -0.0
737,964 + EX28DRAFT_0741 0.29 +0.2
737,964 + EX28DRAFT_0741 0.29 -0.3
737,965 - EX28DRAFT_0741 0.29 +0.0
738,045 - EX28DRAFT_0741 0.39 +1.2
738,111 + EX28DRAFT_0741 0.47 -1.9
738,112 - EX28DRAFT_0741 0.47 +0.4
738,112 - EX28DRAFT_0741 0.47 -0.3
738,186 - EX28DRAFT_0741 0.57 -0.2
738,192 - EX28DRAFT_0741 0.57 +0.1
738,425 + EX28DRAFT_0741 0.86 -0.5
738,485 + -0.5
738,486 - +0.2
738,524 + +1.2
738,546 - +0.7
738,548 + -0.8
738,548 + -0.5
738,549 - -0.7
738,549 - +1.0
738,549 - -0.1
738,559 + -0.6
738,559 + +0.2
738,559 + -0.1
738,560 - +0.3
738,560 - -0.9
738,562 - +0.2
738,581 + +0.0

Or see this region's nucleotide sequence