Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0658

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0657 and EX28DRAFT_0658 are separated by 794 nucleotidesEX28DRAFT_0658 and EX28DRAFT_0659 are separated by 2 nucleotidesEX28DRAFT_0659 and EX28DRAFT_0660 are separated by 123 nucleotides EX28DRAFT_0657: EX28DRAFT_0657 - Universal stress protein UspA and related nucleotide-binding proteins, at 651,929 to 652,357 _0657 EX28DRAFT_0658: EX28DRAFT_0658 - Flagellar transcriptional activator (FlhD), at 653,152 to 653,502 _0658 EX28DRAFT_0659: EX28DRAFT_0659 - Flagellar transcriptional activator (FlhC), at 653,505 to 654,083 _0659 EX28DRAFT_0660: EX28DRAFT_0660 - flagellar motor stator protein MotA, at 654,207 to 655,094 _0660 Position (kb) 653 654Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 652.197 kb on - strand, within EX28DRAFT_0657at 652.220 kb on - strand, within EX28DRAFT_0657at 652.221 kb on + strand, within EX28DRAFT_0657at 652.221 kb on + strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.442 kb on + strandat 652.474 kb on + strandat 652.641 kb on + strandat 652.643 kb on + strandat 652.691 kb on + strandat 652.692 kb on - strandat 652.775 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.910 kb on - strandat 652.910 kb on - strandat 652.910 kb on - strandat 652.958 kb on + strandat 652.962 kb on + strandat 652.962 kb on + strandat 652.987 kb on + strandat 652.988 kb on - strandat 652.988 kb on - strandat 653.015 kb on - strandat 653.029 kb on + strandat 653.030 kb on - strandat 653.030 kb on - strandat 653.047 kb on + strandat 653.048 kb on - strandat 653.055 kb on + strandat 653.055 kb on + strandat 653.124 kb on + strandat 653.127 kb on + strandat 653.127 kb on + strandat 653.127 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.158 kb on - strandat 653.158 kb on - strandat 653.158 kb on - strandat 653.171 kb on + strandat 653.171 kb on + strandat 653.171 kb on + strandat 653.171 kb on + strandat 653.178 kb on + strandat 653.178 kb on + strandat 653.178 kb on + strandat 653.179 kb on - strandat 653.179 kb on - strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.183 kb on - strandat 653.183 kb on - strandat 653.183 kb on - strandat 653.183 kb on - strandat 653.201 kb on - strand, within EX28DRAFT_0658at 653.204 kb on + strand, within EX28DRAFT_0658at 653.204 kb on + strand, within EX28DRAFT_0658at 653.205 kb on - strand, within EX28DRAFT_0658at 653.227 kb on - strand, within EX28DRAFT_0658at 653.227 kb on - strand, within EX28DRAFT_0658at 653.500 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.564 kb on + strand, within EX28DRAFT_0659at 653.581 kb on + strand, within EX28DRAFT_0659at 653.634 kb on + strand, within EX28DRAFT_0659at 653.635 kb on - strand, within EX28DRAFT_0659at 653.645 kb on - strand, within EX28DRAFT_0659at 653.651 kb on + strand, within EX28DRAFT_0659at 653.652 kb on - strand, within EX28DRAFT_0659at 653.697 kb on - strand, within EX28DRAFT_0659at 653.735 kb on + strand, within EX28DRAFT_0659at 653.736 kb on - strand, within EX28DRAFT_0659at 653.736 kb on - strand, within EX28DRAFT_0659at 653.748 kb on + strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.800 kb on - strand, within EX28DRAFT_0659at 653.808 kb on + strand, within EX28DRAFT_0659at 653.809 kb on - strand, within EX28DRAFT_0659at 653.809 kb on - strand, within EX28DRAFT_0659at 653.936 kb on + strand, within EX28DRAFT_0659at 653.936 kb on + strand, within EX28DRAFT_0659at 653.936 kb on + strand, within EX28DRAFT_0659at 653.937 kb on - strand, within EX28DRAFT_0659at 653.976 kb on - strand, within EX28DRAFT_0659at 653.976 kb on - strand, within EX28DRAFT_0659at 653.980 kb on + strand, within EX28DRAFT_0659at 653.980 kb on + strand, within EX28DRAFT_0659at 653.981 kb on - strand, within EX28DRAFT_0659at 654.004 kb on + strand, within EX28DRAFT_0659at 654.014 kb on + strand, within EX28DRAFT_0659at 654.041 kb on + strandat 654.123 kb on + strandat 654.123 kb on + strandat 654.182 kb on + strandat 654.213 kb on - strandat 654.213 kb on - strandat 654.218 kb on - strandat 654.220 kb on + strandat 654.220 kb on + strandat 654.220 kb on + strandat 654.221 kb on - strandat 654.221 kb on - strandat 654.232 kb on + strandat 654.232 kb on + strandat 654.258 kb on + strandat 654.291 kb on + strandat 654.292 kb on - strandat 654.292 kb on - strandat 654.308 kb on + strand, within EX28DRAFT_0660at 654.309 kb on - strand, within EX28DRAFT_0660at 654.309 kb on - strand, within EX28DRAFT_0660at 654.311 kb on + strand, within EX28DRAFT_0660at 654.342 kb on - strand, within EX28DRAFT_0660at 654.359 kb on + strand, within EX28DRAFT_0660at 654.360 kb on - strand, within EX28DRAFT_0660at 654.414 kb on + strand, within EX28DRAFT_0660at 654.414 kb on + strand, within EX28DRAFT_0660at 654.425 kb on + strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.431 kb on + strand, within EX28DRAFT_0660at 654.431 kb on + strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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652,197 - EX28DRAFT_0657 0.62 +0.3
652,220 - EX28DRAFT_0657 0.68 -0.4
652,221 + EX28DRAFT_0657 0.68 +0.7
652,221 + EX28DRAFT_0657 0.68 -1.3
652,222 - EX28DRAFT_0657 0.68 -0.2
652,222 - EX28DRAFT_0657 0.68 -2.0
652,222 - EX28DRAFT_0657 0.68 +0.1
652,442 + +0.4
652,474 + -0.4
652,641 + +0.9
652,643 + +0.3
652,691 + -0.3
652,692 - -0.4
652,775 + -0.7
652,909 + +0.2
652,909 + +0.2
652,909 + +0.5
652,909 + +0.3
652,909 + +0.6
652,909 + -0.6
652,910 - +0.7
652,910 - -0.2
652,910 - -0.6
652,958 + +0.5
652,962 + -0.2
652,962 + +0.1
652,987 + +0.1
652,988 - -3.1
652,988 - -0.6
653,015 - +0.1
653,029 + +0.3
653,030 - -0.4
653,030 - +0.3
653,047 + +0.2
653,048 - -1.6
653,055 + +0.0
653,055 + +1.0
653,124 + -1.9
653,127 + -0.0
653,127 + -0.3
653,127 + -0.3
653,157 + +0.3
653,157 + +0.2
653,157 + -3.4
653,157 + -1.9
653,157 + +0.2
653,157 + -0.2
653,157 + +0.9
653,157 + +0.3
653,157 + -0.4
653,157 + +0.1
653,157 + +0.5
653,158 - +0.1
653,158 - +0.3
653,158 - +0.1
653,171 + +0.3
653,171 + -0.4
653,171 + +0.4
653,171 + +0.0
653,178 + -0.3
653,178 + +0.6
653,178 + +1.5
653,179 - -0.5
653,179 - -0.4
653,182 + +0.5
653,182 + -0.0
653,182 + +0.3
653,182 + -0.2
653,182 + -0.7
653,182 + -0.5
653,182 + +0.3
653,182 + +0.7
653,183 - -1.3
653,183 - -0.1
653,183 - +0.5
653,183 - +0.3
653,201 - EX28DRAFT_0658 0.14 +0.4
653,204 + EX28DRAFT_0658 0.15 +0.5
653,204 + EX28DRAFT_0658 0.15 -0.0
653,205 - EX28DRAFT_0658 0.15 -0.3
653,227 - EX28DRAFT_0658 0.21 +0.4
653,227 - EX28DRAFT_0658 0.21 +0.7
653,500 + -0.3
653,542 + +1.0
653,542 + +0.1
653,542 + -0.4
653,542 + +0.2
653,542 + -0.1
653,542 + -0.9
653,564 + EX28DRAFT_0659 0.10 +0.4
653,581 + EX28DRAFT_0659 0.13 +0.2
653,634 + EX28DRAFT_0659 0.22 -1.8
653,635 - EX28DRAFT_0659 0.22 -0.0
653,645 - EX28DRAFT_0659 0.24 -0.7
653,651 + EX28DRAFT_0659 0.25 -0.4
653,652 - EX28DRAFT_0659 0.25 -0.4
653,697 - EX28DRAFT_0659 0.33 +0.6
653,735 + EX28DRAFT_0659 0.40 +0.4
653,736 - EX28DRAFT_0659 0.40 +0.4
653,736 - EX28DRAFT_0659 0.40 +0.4
653,748 + EX28DRAFT_0659 0.42 +0.5
653,749 - EX28DRAFT_0659 0.42 -0.2
653,749 - EX28DRAFT_0659 0.42 +0.3
653,749 - EX28DRAFT_0659 0.42 +0.4
653,749 - EX28DRAFT_0659 0.42 +0.2
653,749 - EX28DRAFT_0659 0.42 -0.2
653,800 - EX28DRAFT_0659 0.51 -0.1
653,808 + EX28DRAFT_0659 0.52 +0.0
653,809 - EX28DRAFT_0659 0.53 -0.4
653,809 - EX28DRAFT_0659 0.53 +0.4
653,936 + EX28DRAFT_0659 0.74 -1.3
653,936 + EX28DRAFT_0659 0.74 -1.3
653,936 + EX28DRAFT_0659 0.74 -0.0
653,937 - EX28DRAFT_0659 0.75 +0.6
653,976 - EX28DRAFT_0659 0.81 +0.1
653,976 - EX28DRAFT_0659 0.81 +0.0
653,980 + EX28DRAFT_0659 0.82 +0.2
653,980 + EX28DRAFT_0659 0.82 +0.1
653,981 - EX28DRAFT_0659 0.82 +0.1
654,004 + EX28DRAFT_0659 0.86 -0.3
654,014 + EX28DRAFT_0659 0.88 -0.2
654,041 + -1.2
654,123 + -0.0
654,123 + -1.0
654,182 + -0.2
654,213 - +0.3
654,213 - +2.3
654,218 - +0.7
654,220 + +1.4
654,220 + -0.9
654,220 + -0.2
654,221 - +0.7
654,221 - -0.5
654,232 + +0.1
654,232 + +0.5
654,258 + -0.2
654,291 + -0.0
654,292 - -0.3
654,292 - -0.5
654,308 + EX28DRAFT_0660 0.11 +0.9
654,309 - EX28DRAFT_0660 0.11 +1.9
654,309 - EX28DRAFT_0660 0.11 -0.1
654,311 + EX28DRAFT_0660 0.12 -0.1
654,342 - EX28DRAFT_0660 0.15 +0.4
654,359 + EX28DRAFT_0660 0.17 +0.1
654,360 - EX28DRAFT_0660 0.17 -0.1
654,414 + EX28DRAFT_0660 0.23 +0.1
654,414 + EX28DRAFT_0660 0.23 -0.4
654,425 + EX28DRAFT_0660 0.25 +0.7
654,426 - EX28DRAFT_0660 0.25 +0.2
654,426 - EX28DRAFT_0660 0.25 +0.3
654,426 - EX28DRAFT_0660 0.25 +0.0
654,426 - EX28DRAFT_0660 0.25 +0.2
654,426 - EX28DRAFT_0660 0.25 +0.4
654,429 + EX28DRAFT_0660 0.25 -0.5
654,429 + EX28DRAFT_0660 0.25 -0.4
654,429 + EX28DRAFT_0660 0.25 -0.9
654,429 + EX28DRAFT_0660 0.25 -0.3
654,430 - EX28DRAFT_0660 0.25 +1.7
654,430 - EX28DRAFT_0660 0.25 -0.9
654,430 - EX28DRAFT_0660 0.25 +0.0
654,430 - EX28DRAFT_0660 0.25 +0.4
654,431 + EX28DRAFT_0660 0.25 +0.7
654,431 + EX28DRAFT_0660 0.25 +1.5
654,432 - EX28DRAFT_0660 0.25 -0.1
654,432 - EX28DRAFT_0660 0.25 -0.6
654,432 - EX28DRAFT_0660 0.25 -0.3
654,432 - EX28DRAFT_0660 0.25 +1.2

Or see this region's nucleotide sequence