Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0642

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0641 and EX28DRAFT_0642 are separated by 8 nucleotidesEX28DRAFT_0642 and EX28DRAFT_0643 are separated by 99 nucleotides EX28DRAFT_0641: EX28DRAFT_0641 - ABC-type branched-chain amino acid transport system, permease component, at 634,608 to 635,885 _0641 EX28DRAFT_0642: EX28DRAFT_0642 - Branched-chain amino acid ABC-type transport system, permease components, at 635,894 to 636,808 _0642 EX28DRAFT_0643: EX28DRAFT_0643 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 636,908 to 638,029 _0643 Position (kb) 635 636 637Strain fitness (log2 ratio) -2 -1 0 1 2at 634.956 kb on + strand, within EX28DRAFT_0641at 634.957 kb on - strand, within EX28DRAFT_0641at 635.039 kb on + strand, within EX28DRAFT_0641at 635.044 kb on + strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.084 kb on + strand, within EX28DRAFT_0641at 635.085 kb on - strand, within EX28DRAFT_0641at 635.090 kb on + strand, within EX28DRAFT_0641at 635.111 kb on - strand, within EX28DRAFT_0641at 635.291 kb on - strand, within EX28DRAFT_0641at 635.392 kb on + strand, within EX28DRAFT_0641at 635.444 kb on - strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.539 kb on + strand, within EX28DRAFT_0641at 635.539 kb on + strand, within EX28DRAFT_0641at 635.540 kb on - strand, within EX28DRAFT_0641at 635.588 kb on + strand, within EX28DRAFT_0641at 635.589 kb on - strand, within EX28DRAFT_0641at 635.589 kb on - strand, within EX28DRAFT_0641at 635.632 kb on + strand, within EX28DRAFT_0641at 635.634 kb on + strand, within EX28DRAFT_0641at 635.765 kb on + strandat 636.247 kb on + strand, within EX28DRAFT_0642at 636.247 kb on + strand, within EX28DRAFT_0642at 636.248 kb on - strand, within EX28DRAFT_0642at 636.358 kb on - strand, within EX28DRAFT_0642at 636.358 kb on - strand, within EX28DRAFT_0642at 636.532 kb on - strand, within EX28DRAFT_0642at 636.663 kb on + strand, within EX28DRAFT_0642at 636.677 kb on - strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.771 kb on - strandat 636.779 kb on - strandat 636.779 kb on - strandat 636.802 kb on + strandat 636.802 kb on + strandat 636.802 kb on + strandat 636.803 kb on - strandat 636.858 kb on - strandat 636.858 kb on - strandat 636.858 kb on - strandat 636.922 kb on + strandat 636.924 kb on + strandat 636.948 kb on + strandat 636.948 kb on + strandat 636.958 kb on - strandat 636.958 kb on - strandat 637.107 kb on + strand, within EX28DRAFT_0643at 637.107 kb on + strand, within EX28DRAFT_0643at 637.108 kb on - strand, within EX28DRAFT_0643at 637.108 kb on - strand, within EX28DRAFT_0643at 637.122 kb on + strand, within EX28DRAFT_0643at 637.171 kb on + strand, within EX28DRAFT_0643at 637.184 kb on - strand, within EX28DRAFT_0643at 637.212 kb on + strand, within EX28DRAFT_0643at 637.228 kb on - strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.438 kb on - strand, within EX28DRAFT_0643at 637.438 kb on - strand, within EX28DRAFT_0643at 637.438 kb on - strand, within EX28DRAFT_0643at 637.438 kb on - strand, within EX28DRAFT_0643at 637.686 kb on + strand, within EX28DRAFT_0643at 637.686 kb on + strand, within EX28DRAFT_0643at 637.687 kb on - strand, within EX28DRAFT_0643at 637.687 kb on - strand, within EX28DRAFT_0643at 637.687 kb on - strand, within EX28DRAFT_0643at 637.761 kb on - strand, within EX28DRAFT_0643

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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634,956 + EX28DRAFT_0641 0.27 -2.3
634,957 - EX28DRAFT_0641 0.27 +0.0
635,039 + EX28DRAFT_0641 0.34 +0.8
635,044 + EX28DRAFT_0641 0.34 -0.1
635,045 - EX28DRAFT_0641 0.34 -0.4
635,045 - EX28DRAFT_0641 0.34 -0.5
635,045 - EX28DRAFT_0641 0.34 -0.0
635,084 + EX28DRAFT_0641 0.37 -1.3
635,085 - EX28DRAFT_0641 0.37 +1.8
635,090 + EX28DRAFT_0641 0.38 -1.0
635,111 - EX28DRAFT_0641 0.39 +0.7
635,291 - EX28DRAFT_0641 0.53 +0.7
635,392 + EX28DRAFT_0641 0.61 +0.0
635,444 - EX28DRAFT_0641 0.65 -0.1
635,506 + EX28DRAFT_0641 0.70 -1.7
635,506 + EX28DRAFT_0641 0.70 +0.8
635,506 + EX28DRAFT_0641 0.70 +0.1
635,539 + EX28DRAFT_0641 0.73 +0.1
635,539 + EX28DRAFT_0641 0.73 -0.3
635,540 - EX28DRAFT_0641 0.73 -1.9
635,588 + EX28DRAFT_0641 0.77 +0.1
635,589 - EX28DRAFT_0641 0.77 -0.3
635,589 - EX28DRAFT_0641 0.77 -0.1
635,632 + EX28DRAFT_0641 0.80 -0.4
635,634 + EX28DRAFT_0641 0.80 +0.3
635,765 + -0.0
636,247 + EX28DRAFT_0642 0.39 +0.2
636,247 + EX28DRAFT_0642 0.39 +0.8
636,248 - EX28DRAFT_0642 0.39 +0.0
636,358 - EX28DRAFT_0642 0.51 +0.1
636,358 - EX28DRAFT_0642 0.51 -0.6
636,532 - EX28DRAFT_0642 0.70 -1.3
636,663 + EX28DRAFT_0642 0.84 -2.2
636,677 - EX28DRAFT_0642 0.86 +0.5
636,678 + EX28DRAFT_0642 0.86 +1.7
636,678 + EX28DRAFT_0642 0.86 -1.3
636,678 + EX28DRAFT_0642 0.86 -0.7
636,679 - EX28DRAFT_0642 0.86 -0.1
636,679 - EX28DRAFT_0642 0.86 -0.8
636,679 - EX28DRAFT_0642 0.86 -0.3
636,679 - EX28DRAFT_0642 0.86 -0.3
636,771 - -0.1
636,779 - +0.1
636,779 - -1.3
636,802 + -0.5
636,802 + -1.2
636,802 + +0.1
636,803 - -0.1
636,858 - +0.5
636,858 - -0.1
636,858 - -1.9
636,922 + -0.5
636,924 + +0.1
636,948 + +1.3
636,948 + +0.4
636,958 - -0.4
636,958 - +1.0
637,107 + EX28DRAFT_0643 0.18 +1.9
637,107 + EX28DRAFT_0643 0.18 -0.5
637,108 - EX28DRAFT_0643 0.18 +0.4
637,108 - EX28DRAFT_0643 0.18 +0.0
637,122 + EX28DRAFT_0643 0.19 +1.2
637,171 + EX28DRAFT_0643 0.23 +0.7
637,184 - EX28DRAFT_0643 0.25 -0.2
637,212 + EX28DRAFT_0643 0.27 +1.9
637,228 - EX28DRAFT_0643 0.29 -0.7
637,437 + EX28DRAFT_0643 0.47 -1.3
637,437 + EX28DRAFT_0643 0.47 +0.2
637,437 + EX28DRAFT_0643 0.47 +0.3
637,437 + EX28DRAFT_0643 0.47 +0.0
637,437 + EX28DRAFT_0643 0.47 +0.3
637,438 - EX28DRAFT_0643 0.47 -0.8
637,438 - EX28DRAFT_0643 0.47 -0.0
637,438 - EX28DRAFT_0643 0.47 -0.0
637,438 - EX28DRAFT_0643 0.47 +0.1
637,686 + EX28DRAFT_0643 0.69 +0.2
637,686 + EX28DRAFT_0643 0.69 +0.1
637,687 - EX28DRAFT_0643 0.69 -0.0
637,687 - EX28DRAFT_0643 0.69 -2.4
637,687 - EX28DRAFT_0643 0.69 -0.6
637,761 - EX28DRAFT_0643 0.76 -0.6

Or see this region's nucleotide sequence