Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0624

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0623 and EX28DRAFT_0624 are separated by 62 nucleotidesEX28DRAFT_0624 and EX28DRAFT_0625 are separated by 129 nucleotidesEX28DRAFT_0625 and EX28DRAFT_0626 are separated by 54 nucleotides EX28DRAFT_0623: EX28DRAFT_0623 - Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region, at 620,736 to 621,560 _0623 EX28DRAFT_0624: EX28DRAFT_0624 - hypothetical protein, at 621,623 to 622,828 _0624 EX28DRAFT_0625: EX28DRAFT_0625 - RNA polymerase sigma factor, FliA/WhiG family, at 622,958 to 623,677 _0625 EX28DRAFT_0626: EX28DRAFT_0626 - flagellar regulatory protein FliZ, at 623,732 to 624,283 _0626 Position (kb) 621 622 623Strain fitness (log2 ratio) -1 0 1 2at 620.750 kb on + strandat 620.750 kb on + strandat 620.754 kb on - strandat 620.810 kb on + strandat 621.162 kb on - strand, within EX28DRAFT_0623at 621.193 kb on + strand, within EX28DRAFT_0623at 621.597 kb on + strandat 621.854 kb on - strand, within EX28DRAFT_0624at 621.893 kb on - strand, within EX28DRAFT_0624at 621.893 kb on - strand, within EX28DRAFT_0624at 621.893 kb on - strand, within EX28DRAFT_0624at 622.039 kb on + strand, within EX28DRAFT_0624at 622.039 kb on + strand, within EX28DRAFT_0624at 622.039 kb on + strand, within EX28DRAFT_0624at 622.039 kb on + strand, within EX28DRAFT_0624at 622.040 kb on - strand, within EX28DRAFT_0624at 622.175 kb on + strand, within EX28DRAFT_0624at 622.253 kb on + strand, within EX28DRAFT_0624at 622.322 kb on + strand, within EX28DRAFT_0624at 622.515 kb on - strand, within EX28DRAFT_0624at 622.556 kb on + strand, within EX28DRAFT_0624at 622.557 kb on - strand, within EX28DRAFT_0624at 622.609 kb on + strand, within EX28DRAFT_0624at 622.620 kb on + strand, within EX28DRAFT_0624at 622.638 kb on - strand, within EX28DRAFT_0624at 622.638 kb on - strand, within EX28DRAFT_0624at 622.645 kb on + strand, within EX28DRAFT_0624at 622.696 kb on + strand, within EX28DRAFT_0624at 622.697 kb on - strand, within EX28DRAFT_0624at 622.699 kb on + strand, within EX28DRAFT_0624at 622.741 kb on + strandat 622.774 kb on + strandat 622.775 kb on - strandat 622.776 kb on + strandat 622.776 kb on + strandat 622.776 kb on + strandat 622.776 kb on + strandat 622.777 kb on - strandat 622.777 kb on - strandat 622.777 kb on - strandat 622.939 kb on + strandat 622.939 kb on + strandat 622.940 kb on - strandat 622.954 kb on + strandat 622.970 kb on + strandat 622.971 kb on - strandat 622.986 kb on + strandat 622.986 kb on + strandat 622.987 kb on - strandat 623.015 kb on + strandat 623.015 kb on + strandat 623.016 kb on - strandat 623.115 kb on + strand, within EX28DRAFT_0625at 623.115 kb on + strand, within EX28DRAFT_0625at 623.116 kb on - strand, within EX28DRAFT_0625at 623.159 kb on - strand, within EX28DRAFT_0625at 623.166 kb on - strand, within EX28DRAFT_0625at 623.348 kb on + strand, within EX28DRAFT_0625at 623.374 kb on + strand, within EX28DRAFT_0625at 623.375 kb on - strand, within EX28DRAFT_0625at 623.375 kb on - strand, within EX28DRAFT_0625at 623.377 kb on + strand, within EX28DRAFT_0625at 623.393 kb on + strand, within EX28DRAFT_0625at 623.475 kb on + strand, within EX28DRAFT_0625at 623.475 kb on + strand, within EX28DRAFT_0625at 623.475 kb on + strand, within EX28DRAFT_0625at 623.512 kb on + strand, within EX28DRAFT_0625at 623.544 kb on + strand, within EX28DRAFT_0625at 623.544 kb on + strand, within EX28DRAFT_0625at 623.545 kb on - strand, within EX28DRAFT_0625at 623.555 kb on + strand, within EX28DRAFT_0625at 623.556 kb on - strand, within EX28DRAFT_0625at 623.556 kb on - strand, within EX28DRAFT_0625at 623.676 kb on - strandat 623.729 kb on - strandat 623.750 kb on - strandat 623.785 kb on + strandat 623.816 kb on - strand, within EX28DRAFT_0626

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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620,750 + +0.5
620,750 + -0.3
620,754 - -1.7
620,810 + -0.5
621,162 - EX28DRAFT_0623 0.52 +0.3
621,193 + EX28DRAFT_0623 0.55 +0.1
621,597 + +0.0
621,854 - EX28DRAFT_0624 0.19 -1.0
621,893 - EX28DRAFT_0624 0.22 +0.5
621,893 - EX28DRAFT_0624 0.22 +0.0
621,893 - EX28DRAFT_0624 0.22 +0.2
622,039 + EX28DRAFT_0624 0.34 +0.7
622,039 + EX28DRAFT_0624 0.34 +0.8
622,039 + EX28DRAFT_0624 0.34 +1.4
622,039 + EX28DRAFT_0624 0.34 -0.2
622,040 - EX28DRAFT_0624 0.35 +0.4
622,175 + EX28DRAFT_0624 0.46 +0.2
622,253 + EX28DRAFT_0624 0.52 +0.1
622,322 + EX28DRAFT_0624 0.58 -0.3
622,515 - EX28DRAFT_0624 0.74 +1.3
622,556 + EX28DRAFT_0624 0.77 -0.4
622,557 - EX28DRAFT_0624 0.77 -0.8
622,609 + EX28DRAFT_0624 0.82 +0.3
622,620 + EX28DRAFT_0624 0.83 -0.4
622,638 - EX28DRAFT_0624 0.84 +2.7
622,638 - EX28DRAFT_0624 0.84 +0.3
622,645 + EX28DRAFT_0624 0.85 +0.6
622,696 + EX28DRAFT_0624 0.89 +0.6
622,697 - EX28DRAFT_0624 0.89 -1.0
622,699 + EX28DRAFT_0624 0.89 +0.4
622,741 + -0.1
622,774 + +0.8
622,775 - +0.1
622,776 + -0.1
622,776 + -0.6
622,776 + +0.6
622,776 + +0.6
622,777 - -0.4
622,777 - -0.6
622,777 - +1.1
622,939 + +0.2
622,939 + -0.6
622,940 - -0.0
622,954 + +0.8
622,970 + +0.6
622,971 - -0.5
622,986 + +0.5
622,986 + +0.6
622,987 - -0.2
623,015 + +0.1
623,015 + -0.3
623,016 - +0.3
623,115 + EX28DRAFT_0625 0.22 +0.2
623,115 + EX28DRAFT_0625 0.22 +0.3
623,116 - EX28DRAFT_0625 0.22 +0.4
623,159 - EX28DRAFT_0625 0.28 +0.7
623,166 - EX28DRAFT_0625 0.29 -0.2
623,348 + EX28DRAFT_0625 0.54 +1.2
623,374 + EX28DRAFT_0625 0.58 +0.8
623,375 - EX28DRAFT_0625 0.58 +0.2
623,375 - EX28DRAFT_0625 0.58 +0.0
623,377 + EX28DRAFT_0625 0.58 +0.7
623,393 + EX28DRAFT_0625 0.60 -0.1
623,475 + EX28DRAFT_0625 0.72 +2.0
623,475 + EX28DRAFT_0625 0.72 -0.3
623,475 + EX28DRAFT_0625 0.72 +0.2
623,512 + EX28DRAFT_0625 0.77 -0.0
623,544 + EX28DRAFT_0625 0.81 -1.0
623,544 + EX28DRAFT_0625 0.81 +0.1
623,545 - EX28DRAFT_0625 0.82 +0.2
623,555 + EX28DRAFT_0625 0.83 +0.7
623,556 - EX28DRAFT_0625 0.83 -0.0
623,556 - EX28DRAFT_0625 0.83 -0.4
623,676 - +1.3
623,729 - -0.0
623,750 - -0.6
623,785 + -0.5
623,816 - EX28DRAFT_0626 0.15 -0.3

Or see this region's nucleotide sequence