Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0619

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0617 and EX28DRAFT_0618 are separated by 74 nucleotidesEX28DRAFT_0618 and EX28DRAFT_0619 are separated by 102 nucleotidesEX28DRAFT_0619 and EX28DRAFT_0620 are separated by 48 nucleotidesEX28DRAFT_0620 and EX28DRAFT_0621 are separated by 5 nucleotidesEX28DRAFT_0621 and EX28DRAFT_0622 are separated by 21 nucleotides EX28DRAFT_0617: EX28DRAFT_0617 - flagellar hook-basal body complex protein FliE, at 615,661 to 615,975 _0617 EX28DRAFT_0618: EX28DRAFT_0618 - YedD-like protein, at 616,050 to 616,463 _0618 EX28DRAFT_0619: EX28DRAFT_0619 - Glycosidases, at 616,566 to 618,056 _0619 EX28DRAFT_0620: EX28DRAFT_0620 - Flagellar protein FliT, at 618,105 to 618,479 _0620 EX28DRAFT_0621: EX28DRAFT_0621 - flagellar biosynthetic protein FliS, at 618,485 to 618,889 _0621 EX28DRAFT_0622: EX28DRAFT_0622 - Flagellar capping protein, at 618,911 to 620,335 _0622 Position (kb) 616 617 618 619Strain fitness (log2 ratio) -2 -1 0 1at 615.572 kb on + strandat 615.591 kb on + strandat 615.592 kb on - strandat 615.592 kb on - strandat 615.595 kb on + strandat 615.604 kb on + strandat 615.610 kb on - strandat 615.623 kb on + strandat 615.624 kb on - strandat 615.638 kb on - strandat 615.666 kb on + strandat 615.667 kb on - strandat 615.669 kb on - strandat 615.946 kb on + strandat 616.113 kb on + strand, within EX28DRAFT_0618at 616.113 kb on + strand, within EX28DRAFT_0618at 616.113 kb on + strand, within EX28DRAFT_0618at 616.113 kb on + strand, within EX28DRAFT_0618at 616.114 kb on - strand, within EX28DRAFT_0618at 616.309 kb on - strand, within EX28DRAFT_0618at 616.309 kb on - strand, within EX28DRAFT_0618at 616.338 kb on + strand, within EX28DRAFT_0618at 616.451 kb on + strandat 616.467 kb on + strandat 616.567 kb on + strandat 616.568 kb on - strandat 616.568 kb on - strandat 616.568 kb on - strandat 616.616 kb on + strandat 616.697 kb on - strandat 616.930 kb on + strand, within EX28DRAFT_0619at 617.137 kb on + strand, within EX28DRAFT_0619at 617.224 kb on + strand, within EX28DRAFT_0619at 617.224 kb on + strand, within EX28DRAFT_0619at 617.224 kb on + strand, within EX28DRAFT_0619at 617.225 kb on - strand, within EX28DRAFT_0619at 617.225 kb on - strand, within EX28DRAFT_0619at 617.238 kb on - strand, within EX28DRAFT_0619at 617.271 kb on - strand, within EX28DRAFT_0619at 617.401 kb on + strand, within EX28DRAFT_0619at 617.402 kb on - strand, within EX28DRAFT_0619at 617.459 kb on - strand, within EX28DRAFT_0619at 617.459 kb on - strand, within EX28DRAFT_0619at 617.468 kb on + strand, within EX28DRAFT_0619at 617.469 kb on - strand, within EX28DRAFT_0619at 617.794 kb on - strand, within EX28DRAFT_0619at 617.794 kb on - strand, within EX28DRAFT_0619at 617.794 kb on - strand, within EX28DRAFT_0619at 617.878 kb on + strand, within EX28DRAFT_0619at 617.918 kb on + strandat 618.016 kb on + strandat 618.016 kb on + strandat 618.017 kb on - strandat 618.033 kb on + strandat 618.034 kb on - strandat 618.034 kb on - strandat 618.091 kb on + strandat 618.109 kb on - strandat 618.146 kb on + strand, within EX28DRAFT_0620at 618.171 kb on - strand, within EX28DRAFT_0620at 618.362 kb on - strand, within EX28DRAFT_0620at 618.473 kb on + strandat 618.548 kb on + strand, within EX28DRAFT_0621at 618.575 kb on + strand, within EX28DRAFT_0621at 618.617 kb on - strand, within EX28DRAFT_0621at 618.618 kb on + strand, within EX28DRAFT_0621at 618.780 kb on + strand, within EX28DRAFT_0621at 618.782 kb on - strand, within EX28DRAFT_0621at 618.845 kb on + strand, within EX28DRAFT_0621at 618.851 kb on + strandat 618.883 kb on + strandat 618.884 kb on - strandat 618.884 kb on - strandat 618.886 kb on - strandat 618.886 kb on - strandat 618.886 kb on - strandat 618.886 kb on - strandat 618.886 kb on - strandat 618.890 kb on - strandat 618.907 kb on - strandat 618.907 kb on - strandat 618.940 kb on - strandat 618.968 kb on + strandat 618.971 kb on + strandat 619.041 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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615,572 + +0.1
615,591 + +0.9
615,592 - -0.3
615,592 - -0.5
615,595 + +0.3
615,604 + -0.1
615,610 - -0.2
615,623 + +0.3
615,624 - +0.4
615,638 - -0.0
615,666 + +0.4
615,667 - +0.4
615,669 - +0.7
615,946 + -0.1
616,113 + EX28DRAFT_0618 0.15 +0.7
616,113 + EX28DRAFT_0618 0.15 +0.0
616,113 + EX28DRAFT_0618 0.15 +0.7
616,113 + EX28DRAFT_0618 0.15 -0.5
616,114 - EX28DRAFT_0618 0.15 -0.3
616,309 - EX28DRAFT_0618 0.63 -0.7
616,309 - EX28DRAFT_0618 0.63 +0.2
616,338 + EX28DRAFT_0618 0.70 -0.3
616,451 + -0.1
616,467 + -1.1
616,567 + -0.4
616,568 - +0.7
616,568 - +0.1
616,568 - -0.3
616,616 + +0.4
616,697 - +1.4
616,930 + EX28DRAFT_0619 0.24 -0.0
617,137 + EX28DRAFT_0619 0.38 +0.3
617,224 + EX28DRAFT_0619 0.44 +0.4
617,224 + EX28DRAFT_0619 0.44 +0.1
617,224 + EX28DRAFT_0619 0.44 +0.4
617,225 - EX28DRAFT_0619 0.44 +0.5
617,225 - EX28DRAFT_0619 0.44 +0.6
617,238 - EX28DRAFT_0619 0.45 -0.0
617,271 - EX28DRAFT_0619 0.47 +0.7
617,401 + EX28DRAFT_0619 0.56 +0.5
617,402 - EX28DRAFT_0619 0.56 -0.2
617,459 - EX28DRAFT_0619 0.60 +0.2
617,459 - EX28DRAFT_0619 0.60 +0.3
617,468 + EX28DRAFT_0619 0.60 +0.9
617,469 - EX28DRAFT_0619 0.61 +1.6
617,794 - EX28DRAFT_0619 0.82 +0.1
617,794 - EX28DRAFT_0619 0.82 +0.2
617,794 - EX28DRAFT_0619 0.82 -1.3
617,878 + EX28DRAFT_0619 0.88 -0.3
617,918 + +0.4
618,016 + -0.1
618,016 + -0.8
618,017 - +0.1
618,033 + -2.3
618,034 - -0.1
618,034 - +1.2
618,091 + -0.2
618,109 - -0.5
618,146 + EX28DRAFT_0620 0.11 -2.1
618,171 - EX28DRAFT_0620 0.18 +1.1
618,362 - EX28DRAFT_0620 0.69 -2.3
618,473 + +0.9
618,548 + EX28DRAFT_0621 0.16 -1.4
618,575 + EX28DRAFT_0621 0.22 +0.1
618,617 - EX28DRAFT_0621 0.33 -0.4
618,618 + EX28DRAFT_0621 0.33 -0.7
618,780 + EX28DRAFT_0621 0.73 -0.3
618,782 - EX28DRAFT_0621 0.73 +1.2
618,845 + EX28DRAFT_0621 0.89 -0.2
618,851 + +0.5
618,883 + -0.1
618,884 - -0.1
618,884 - -0.5
618,886 - +0.6
618,886 - -0.8
618,886 - +0.2
618,886 - -2.3
618,886 - -0.3
618,890 - +1.1
618,907 - +1.2
618,907 - -1.1
618,940 - +0.8
618,968 + -0.3
618,971 + +0.4
619,041 + -0.1

Or see this region's nucleotide sequence