Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0581

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0580 and EX28DRAFT_0581 are separated by 92 nucleotidesEX28DRAFT_0581 and EX28DRAFT_0582 overlap by 26 nucleotidesEX28DRAFT_0582 and EX28DRAFT_0583 overlap by 4 nucleotides EX28DRAFT_0580: EX28DRAFT_0580 - Uncharacterized protein related to deoxyribodipyrimidine photolyase, at 578,147 to 579,676 _0580 EX28DRAFT_0581: EX28DRAFT_0581 - Transcriptional regulator, at 579,769 to 580,668 _0581 EX28DRAFT_0582: EX28DRAFT_0582 - ABC-type molybdate transport system, periplasmic component, at 580,643 to 581,431 _0582 EX28DRAFT_0583: EX28DRAFT_0583 - metabolite-proton symporter, at 581,428 to 582,741 _0583 Position (kb) 579 580 581Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 578.869 kb on + strand, within EX28DRAFT_0580at 579.099 kb on - strand, within EX28DRAFT_0580at 579.317 kb on + strand, within EX28DRAFT_0580at 579.317 kb on + strand, within EX28DRAFT_0580at 579.329 kb on + strand, within EX28DRAFT_0580at 579.329 kb on + strand, within EX28DRAFT_0580at 579.329 kb on + strand, within EX28DRAFT_0580at 579.330 kb on - strand, within EX28DRAFT_0580at 579.417 kb on - strand, within EX28DRAFT_0580at 579.417 kb on - strand, within EX28DRAFT_0580at 579.434 kb on + strand, within EX28DRAFT_0580at 579.442 kb on + strand, within EX28DRAFT_0580at 579.442 kb on + strand, within EX28DRAFT_0580at 579.442 kb on + strand, within EX28DRAFT_0580at 579.451 kb on + strand, within EX28DRAFT_0580at 579.451 kb on + strand, within EX28DRAFT_0580at 579.451 kb on + strand, within EX28DRAFT_0580at 579.452 kb on - strand, within EX28DRAFT_0580at 579.455 kb on + strand, within EX28DRAFT_0580at 579.455 kb on + strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.481 kb on + strand, within EX28DRAFT_0580at 579.679 kb on + strandat 579.679 kb on + strandat 579.680 kb on - strandat 579.680 kb on - strandat 579.712 kb on + strandat 579.724 kb on - strandat 579.824 kb on - strandat 579.828 kb on + strandat 579.852 kb on + strandat 579.956 kb on + strand, within EX28DRAFT_0581at 579.957 kb on - strand, within EX28DRAFT_0581at 579.957 kb on - strand, within EX28DRAFT_0581at 579.957 kb on - strand, within EX28DRAFT_0581at 580.091 kb on - strand, within EX28DRAFT_0581at 580.096 kb on - strand, within EX28DRAFT_0581at 580.147 kb on - strand, within EX28DRAFT_0581at 580.147 kb on - strand, within EX28DRAFT_0581at 580.147 kb on - strand, within EX28DRAFT_0581at 580.273 kb on + strand, within EX28DRAFT_0581at 580.273 kb on + strand, within EX28DRAFT_0581at 580.273 kb on + strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.351 kb on + strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.353 kb on + strand, within EX28DRAFT_0581at 580.354 kb on - strand, within EX28DRAFT_0581at 580.472 kb on + strand, within EX28DRAFT_0581at 580.473 kb on - strand, within EX28DRAFT_0581at 580.615 kb on + strandat 580.615 kb on + strandat 580.722 kb on + strand, within EX28DRAFT_0582at 580.795 kb on - strand, within EX28DRAFT_0582at 580.795 kb on - strand, within EX28DRAFT_0582at 580.822 kb on + strand, within EX28DRAFT_0582at 580.878 kb on + strand, within EX28DRAFT_0582at 580.878 kb on + strand, within EX28DRAFT_0582at 580.986 kb on + strand, within EX28DRAFT_0582at 580.987 kb on - strand, within EX28DRAFT_0582at 581.186 kb on - strand, within EX28DRAFT_0582at 581.298 kb on + strand, within EX28DRAFT_0582at 581.299 kb on - strand, within EX28DRAFT_0582at 581.354 kb on + strandat 581.354 kb on + strandat 581.355 kb on - strandat 581.411 kb on - strandat 581.419 kb on - strandat 581.431 kb on + strandat 581.431 kb on + strandat 581.458 kb on - strandat 581.458 kb on - strandat 581.489 kb on + strandat 581.489 kb on + strandat 581.624 kb on + strand, within EX28DRAFT_0583at 581.664 kb on + strand, within EX28DRAFT_0583at 581.665 kb on - strand, within EX28DRAFT_0583at 581.665 kb on - strand, within EX28DRAFT_0583

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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578,869 + EX28DRAFT_0580 0.47 -0.1
579,099 - EX28DRAFT_0580 0.62 -0.2
579,317 + EX28DRAFT_0580 0.76 -0.2
579,317 + EX28DRAFT_0580 0.76 +0.3
579,329 + EX28DRAFT_0580 0.77 -0.1
579,329 + EX28DRAFT_0580 0.77 -0.9
579,329 + EX28DRAFT_0580 0.77 +0.9
579,330 - EX28DRAFT_0580 0.77 +1.1
579,417 - EX28DRAFT_0580 0.83 +0.0
579,417 - EX28DRAFT_0580 0.83 +2.1
579,434 + EX28DRAFT_0580 0.84 -0.3
579,442 + EX28DRAFT_0580 0.85 -1.8
579,442 + EX28DRAFT_0580 0.85 -0.4
579,442 + EX28DRAFT_0580 0.85 -0.1
579,451 + EX28DRAFT_0580 0.85 -0.8
579,451 + EX28DRAFT_0580 0.85 -0.7
579,451 + EX28DRAFT_0580 0.85 +1.8
579,452 - EX28DRAFT_0580 0.85 +0.9
579,455 + EX28DRAFT_0580 0.85 -1.0
579,455 + EX28DRAFT_0580 0.85 +1.1
579,456 - EX28DRAFT_0580 0.86 -0.1
579,456 - EX28DRAFT_0580 0.86 -0.5
579,456 - EX28DRAFT_0580 0.86 +0.8
579,456 - EX28DRAFT_0580 0.86 +0.5
579,456 - EX28DRAFT_0580 0.86 -0.8
579,481 + EX28DRAFT_0580 0.87 +2.1
579,679 + -0.7
579,679 + +0.0
579,680 - -0.8
579,680 - +0.2
579,712 + -0.4
579,724 - -1.2
579,824 - +0.8
579,828 + +0.0
579,852 + +0.4
579,956 + EX28DRAFT_0581 0.21 +0.6
579,957 - EX28DRAFT_0581 0.21 +0.5
579,957 - EX28DRAFT_0581 0.21 +0.4
579,957 - EX28DRAFT_0581 0.21 -0.4
580,091 - EX28DRAFT_0581 0.36 -0.0
580,096 - EX28DRAFT_0581 0.36 +0.0
580,147 - EX28DRAFT_0581 0.42 -0.7
580,147 - EX28DRAFT_0581 0.42 +0.2
580,147 - EX28DRAFT_0581 0.42 +0.2
580,273 + EX28DRAFT_0581 0.56 +0.2
580,273 + EX28DRAFT_0581 0.56 -0.5
580,273 + EX28DRAFT_0581 0.56 +0.8
580,274 - EX28DRAFT_0581 0.56 +0.4
580,274 - EX28DRAFT_0581 0.56 +1.7
580,274 - EX28DRAFT_0581 0.56 +0.7
580,274 - EX28DRAFT_0581 0.56 +0.5
580,274 - EX28DRAFT_0581 0.56 +0.1
580,351 + EX28DRAFT_0581 0.65 +0.4
580,352 - EX28DRAFT_0581 0.65 +0.1
580,352 - EX28DRAFT_0581 0.65 -0.1
580,352 - EX28DRAFT_0581 0.65 +0.1
580,352 - EX28DRAFT_0581 0.65 +0.2
580,353 + EX28DRAFT_0581 0.65 +0.5
580,354 - EX28DRAFT_0581 0.65 -0.2
580,472 + EX28DRAFT_0581 0.78 +0.1
580,473 - EX28DRAFT_0581 0.78 +0.8
580,615 + +0.4
580,615 + +0.3
580,722 + EX28DRAFT_0582 0.10 -0.5
580,795 - EX28DRAFT_0582 0.19 +0.3
580,795 - EX28DRAFT_0582 0.19 -0.1
580,822 + EX28DRAFT_0582 0.23 -0.4
580,878 + EX28DRAFT_0582 0.30 +0.4
580,878 + EX28DRAFT_0582 0.30 -0.3
580,986 + EX28DRAFT_0582 0.43 +0.3
580,987 - EX28DRAFT_0582 0.44 -0.1
581,186 - EX28DRAFT_0582 0.69 +0.4
581,298 + EX28DRAFT_0582 0.83 -0.1
581,299 - EX28DRAFT_0582 0.83 -0.9
581,354 + -3.7
581,354 + +0.2
581,355 - -0.2
581,411 - -0.1
581,419 - -0.8
581,431 + +0.8
581,431 + +0.4
581,458 - +0.3
581,458 - +0.5
581,489 + -1.1
581,489 + -0.1
581,624 + EX28DRAFT_0583 0.15 -1.6
581,664 + EX28DRAFT_0583 0.18 -1.7
581,665 - EX28DRAFT_0583 0.18 +0.6
581,665 - EX28DRAFT_0583 0.18 -0.3

Or see this region's nucleotide sequence