Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0535

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0533 and EX28DRAFT_0534 overlap by 7 nucleotidesEX28DRAFT_0534 and EX28DRAFT_0535 overlap by 19 nucleotidesEX28DRAFT_0535 and EX28DRAFT_0536 overlap by 1 nucleotidesEX28DRAFT_0536 and EX28DRAFT_0537 overlap by 1 nucleotides EX28DRAFT_0533: EX28DRAFT_0533 - phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 528,089 to 528,700 _0533 EX28DRAFT_0534: EX28DRAFT_0534 - imidazoleglycerol phosphate synthase, cyclase subunit, at 528,694 to 529,470 _0534 EX28DRAFT_0535: EX28DRAFT_0535 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16), at 529,452 to 530,189 _0535 EX28DRAFT_0536: EX28DRAFT_0536 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 530,189 to 530,779 _0536 EX28DRAFT_0537: EX28DRAFT_0537 - imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 530,779 to 531,846 _0537 Position (kb) 529 530 531Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 528.592 kb on + strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.595 kb on - strand, within EX28DRAFT_0533at 528.731 kb on + strandat 528.750 kb on + strandat 528.751 kb on - strandat 528.751 kb on - strandat 529.053 kb on - strand, within EX28DRAFT_0534at 529.074 kb on - strand, within EX28DRAFT_0534at 529.098 kb on + strand, within EX28DRAFT_0534at 529.099 kb on - strand, within EX28DRAFT_0534at 529.177 kb on - strand, within EX28DRAFT_0534at 529.322 kb on + strand, within EX28DRAFT_0534at 529.323 kb on - strand, within EX28DRAFT_0534at 529.435 kb on + strandat 529.450 kb on + strandat 529.450 kb on + strandat 529.450 kb on + strandat 529.451 kb on - strandat 529.451 kb on - strandat 529.490 kb on + strandat 529.566 kb on + strand, within EX28DRAFT_0535at 529.566 kb on + strand, within EX28DRAFT_0535at 529.566 kb on + strand, within EX28DRAFT_0535at 529.567 kb on - strand, within EX28DRAFT_0535at 530.055 kb on + strand, within EX28DRAFT_0535at 530.055 kb on + strand, within EX28DRAFT_0535at 530.157 kb on - strandat 530.184 kb on - strandat 530.305 kb on - strand, within EX28DRAFT_0536at 530.346 kb on + strand, within EX28DRAFT_0536at 530.649 kb on - strand, within EX28DRAFT_0536at 530.707 kb on - strand, within EX28DRAFT_0536at 530.781 kb on - strandat 531.003 kb on + strand, within EX28DRAFT_0537at 531.005 kb on + strand, within EX28DRAFT_0537at 531.173 kb on + strand, within EX28DRAFT_0537at 531.174 kb on - strand, within EX28DRAFT_0537at 531.174 kb on - strand, within EX28DRAFT_0537at 531.174 kb on - strand, within EX28DRAFT_0537

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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528,592 + EX28DRAFT_0533 0.82 -4.2
528,593 - EX28DRAFT_0533 0.82 -3.9
528,593 - EX28DRAFT_0533 0.82 -3.7
528,593 - EX28DRAFT_0533 0.82 -3.0
528,593 - EX28DRAFT_0533 0.82 -3.7
528,593 - EX28DRAFT_0533 0.82 -4.5
528,595 - EX28DRAFT_0533 0.83 -3.5
528,731 + -5.2
528,750 + -3.7
528,751 - -4.0
528,751 - -3.5
529,053 - EX28DRAFT_0534 0.46 -3.8
529,074 - EX28DRAFT_0534 0.49 -3.8
529,098 + EX28DRAFT_0534 0.52 -3.5
529,099 - EX28DRAFT_0534 0.52 -2.9
529,177 - EX28DRAFT_0534 0.62 -0.2
529,322 + EX28DRAFT_0534 0.81 -3.6
529,323 - EX28DRAFT_0534 0.81 -4.1
529,435 + -3.7
529,450 + -3.9
529,450 + -4.6
529,450 + -1.2
529,451 - -5.4
529,451 - -3.5
529,490 + -3.5
529,566 + EX28DRAFT_0535 0.15 -4.0
529,566 + EX28DRAFT_0535 0.15 -4.6
529,566 + EX28DRAFT_0535 0.15 -2.5
529,567 - EX28DRAFT_0535 0.16 -5.8
530,055 + EX28DRAFT_0535 0.82 -3.7
530,055 + EX28DRAFT_0535 0.82 -5.8
530,157 - -0.4
530,184 - -1.1
530,305 - EX28DRAFT_0536 0.20 -2.4
530,346 + EX28DRAFT_0536 0.27 -2.5
530,649 - EX28DRAFT_0536 0.78 -3.6
530,707 - EX28DRAFT_0536 0.88 -3.8
530,781 - -3.3
531,003 + EX28DRAFT_0537 0.21 -4.2
531,005 + EX28DRAFT_0537 0.21 -6.0
531,173 + EX28DRAFT_0537 0.37 -2.5
531,174 - EX28DRAFT_0537 0.37 -4.1
531,174 - EX28DRAFT_0537 0.37 -3.9
531,174 - EX28DRAFT_0537 0.37 -1.2

Or see this region's nucleotide sequence