Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0481

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0480 and EX28DRAFT_0481 overlap by 4 nucleotidesEX28DRAFT_0481 and EX28DRAFT_0482 are separated by 0 nucleotides EX28DRAFT_0480: EX28DRAFT_0480 - Signal transduction histidine kinase, at 462,524 to 463,927 _0480 EX28DRAFT_0481: EX28DRAFT_0481 - Arabinose efflux permease, at 463,924 to 465,339 _0481 EX28DRAFT_0482: EX28DRAFT_0482 - Cation/multidrug efflux pump, at 465,340 to 468,417 _0482 Position (kb) 463 464 465 466Strain fitness (log2 ratio) -2 -1 0 1at 462.980 kb on - strand, within EX28DRAFT_0480at 462.980 kb on - strand, within EX28DRAFT_0480at 463.709 kb on - strand, within EX28DRAFT_0480at 463.775 kb on + strand, within EX28DRAFT_0480at 463.803 kb on + strandat 463.811 kb on - strandat 463.880 kb on + strandat 463.881 kb on - strandat 463.950 kb on + strandat 464.033 kb on + strandat 464.034 kb on - strandat 464.034 kb on - strandat 464.034 kb on - strandat 464.034 kb on - strandat 464.037 kb on + strandat 464.037 kb on + strandat 464.037 kb on + strandat 464.038 kb on - strandat 464.038 kb on - strandat 464.039 kb on + strandat 464.040 kb on - strandat 464.093 kb on + strand, within EX28DRAFT_0481at 464.279 kb on + strand, within EX28DRAFT_0481at 464.279 kb on + strand, within EX28DRAFT_0481at 464.552 kb on + strand, within EX28DRAFT_0481at 464.618 kb on + strand, within EX28DRAFT_0481at 464.709 kb on + strand, within EX28DRAFT_0481at 464.776 kb on - strand, within EX28DRAFT_0481at 464.777 kb on + strand, within EX28DRAFT_0481at 464.778 kb on - strand, within EX28DRAFT_0481at 464.862 kb on - strand, within EX28DRAFT_0481at 464.943 kb on + strand, within EX28DRAFT_0481at 464.944 kb on - strand, within EX28DRAFT_0481at 464.945 kb on + strand, within EX28DRAFT_0481at 464.946 kb on - strand, within EX28DRAFT_0481at 464.946 kb on - strand, within EX28DRAFT_0481at 464.946 kb on - strand, within EX28DRAFT_0481at 465.111 kb on + strand, within EX28DRAFT_0481at 465.180 kb on - strand, within EX28DRAFT_0481at 465.180 kb on - strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.195 kb on + strand, within EX28DRAFT_0481at 465.196 kb on - strand, within EX28DRAFT_0481at 465.201 kb on + strandat 465.202 kb on - strandat 465.202 kb on - strandat 465.304 kb on + strandat 465.305 kb on - strandat 465.342 kb on - strandat 465.404 kb on + strandat 465.404 kb on + strandat 465.405 kb on - strandat 465.422 kb on + strandat 465.422 kb on + strandat 465.422 kb on + strandat 465.682 kb on + strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.683 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.688 kb on - strand, within EX28DRAFT_0482at 465.797 kb on + strand, within EX28DRAFT_0482at 465.807 kb on - strand, within EX28DRAFT_0482at 465.825 kb on + strand, within EX28DRAFT_0482at 465.825 kb on + strand, within EX28DRAFT_0482at 465.825 kb on + strand, within EX28DRAFT_0482at 465.826 kb on - strand, within EX28DRAFT_0482at 465.826 kb on - strand, within EX28DRAFT_0482at 465.826 kb on - strand, within EX28DRAFT_0482at 465.828 kb on - strand, within EX28DRAFT_0482at 465.828 kb on - strand, within EX28DRAFT_0482at 465.828 kb on - strand, within EX28DRAFT_0482at 465.999 kb on + strand, within EX28DRAFT_0482at 466.079 kb on + strand, within EX28DRAFT_0482at 466.181 kb on + strand, within EX28DRAFT_0482at 466.199 kb on + strand, within EX28DRAFT_0482at 466.200 kb on - strand, within EX28DRAFT_0482at 466.295 kb on + strand, within EX28DRAFT_0482at 466.296 kb on - strand, within EX28DRAFT_0482

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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462,980 - EX28DRAFT_0480 0.32 +0.8
462,980 - EX28DRAFT_0480 0.32 +0.5
463,709 - EX28DRAFT_0480 0.84 -1.9
463,775 + EX28DRAFT_0480 0.89 -0.0
463,803 + +0.8
463,811 - +0.1
463,880 + +0.1
463,881 - +0.1
463,950 + +1.0
464,033 + -0.6
464,034 - +0.3
464,034 - -0.6
464,034 - -0.3
464,034 - +0.3
464,037 + +0.1
464,037 + +0.2
464,037 + +0.5
464,038 - -0.2
464,038 - -1.2
464,039 + +0.7
464,040 - -0.4
464,093 + EX28DRAFT_0481 0.12 -0.4
464,279 + EX28DRAFT_0481 0.25 -0.1
464,279 + EX28DRAFT_0481 0.25 +0.2
464,552 + EX28DRAFT_0481 0.44 -0.1
464,618 + EX28DRAFT_0481 0.49 -0.4
464,709 + EX28DRAFT_0481 0.55 +0.4
464,776 - EX28DRAFT_0481 0.60 -0.7
464,777 + EX28DRAFT_0481 0.60 -0.6
464,778 - EX28DRAFT_0481 0.60 -0.2
464,862 - EX28DRAFT_0481 0.66 +0.2
464,943 + EX28DRAFT_0481 0.72 +0.4
464,944 - EX28DRAFT_0481 0.72 -0.2
464,945 + EX28DRAFT_0481 0.72 -0.7
464,946 - EX28DRAFT_0481 0.72 -0.6
464,946 - EX28DRAFT_0481 0.72 -0.7
464,946 - EX28DRAFT_0481 0.72 +0.5
465,111 + EX28DRAFT_0481 0.84 -1.9
465,180 - EX28DRAFT_0481 0.89 +0.1
465,180 - EX28DRAFT_0481 0.89 +0.4
465,195 + EX28DRAFT_0481 0.90 +0.0
465,195 + EX28DRAFT_0481 0.90 -0.1
465,195 + EX28DRAFT_0481 0.90 +0.7
465,195 + EX28DRAFT_0481 0.90 -0.6
465,195 + EX28DRAFT_0481 0.90 -0.5
465,196 - EX28DRAFT_0481 0.90 +0.8
465,201 + -0.5
465,202 - -0.2
465,202 - -0.6
465,304 + -0.2
465,305 - +0.3
465,342 - +0.8
465,404 + +0.2
465,404 + -1.2
465,405 - -0.0
465,422 + -0.3
465,422 + -0.0
465,422 + +0.3
465,682 + EX28DRAFT_0482 0.11 -2.2
465,683 - EX28DRAFT_0482 0.11 -0.2
465,683 - EX28DRAFT_0482 0.11 -1.7
465,683 - EX28DRAFT_0482 0.11 +1.3
465,683 - EX28DRAFT_0482 0.11 +0.5
465,688 - EX28DRAFT_0482 0.11 +0.6
465,688 - EX28DRAFT_0482 0.11 +0.3
465,688 - EX28DRAFT_0482 0.11 +0.0
465,688 - EX28DRAFT_0482 0.11 -0.5
465,797 + EX28DRAFT_0482 0.15 +0.0
465,807 - EX28DRAFT_0482 0.15 -0.5
465,825 + EX28DRAFT_0482 0.16 +1.3
465,825 + EX28DRAFT_0482 0.16 -0.5
465,825 + EX28DRAFT_0482 0.16 -0.5
465,826 - EX28DRAFT_0482 0.16 -0.3
465,826 - EX28DRAFT_0482 0.16 +0.2
465,826 - EX28DRAFT_0482 0.16 -0.2
465,828 - EX28DRAFT_0482 0.16 -0.8
465,828 - EX28DRAFT_0482 0.16 -0.2
465,828 - EX28DRAFT_0482 0.16 +0.6
465,999 + EX28DRAFT_0482 0.21 +0.1
466,079 + EX28DRAFT_0482 0.24 -0.6
466,181 + EX28DRAFT_0482 0.27 +0.0
466,199 + EX28DRAFT_0482 0.28 -0.5
466,200 - EX28DRAFT_0482 0.28 +0.3
466,295 + EX28DRAFT_0482 0.31 +0.1
466,296 - EX28DRAFT_0482 0.31 -0.2

Or see this region's nucleotide sequence