Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0431

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0430 and EX28DRAFT_0431 are separated by 12 nucleotidesEX28DRAFT_0431 and EX28DRAFT_0432 overlap by 8 nucleotidesEX28DRAFT_0432 and EX28DRAFT_0433 overlap by 17 nucleotides EX28DRAFT_0430: EX28DRAFT_0430 - Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), at 411,489 to 412,406 _0430 EX28DRAFT_0431: EX28DRAFT_0431 - ABC-type proline/glycine betaine transport systems, permease component, at 412,419 to 413,576 _0431 EX28DRAFT_0432: EX28DRAFT_0432 - ABC-type proline/glycine betaine transport systems, ATPase components, at 413,569 to 414,519 _0432 EX28DRAFT_0433: EX28DRAFT_0433 - ABC-type proline/glycine betaine transport systems, permease component, at 414,503 to 415,240 _0433 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1at 411.431 kb on - strandat 411.431 kb on - strandat 411.431 kb on - strandat 411.431 kb on - strandat 411.431 kb on - strandat 411.436 kb on - strandat 411.615 kb on - strand, within EX28DRAFT_0430at 411.617 kb on + strand, within EX28DRAFT_0430at 411.719 kb on + strand, within EX28DRAFT_0430at 411.719 kb on + strand, within EX28DRAFT_0430at 411.915 kb on - strand, within EX28DRAFT_0430at 411.969 kb on - strand, within EX28DRAFT_0430at 411.969 kb on - strand, within EX28DRAFT_0430at 412.033 kb on - strand, within EX28DRAFT_0430at 412.204 kb on + strand, within EX28DRAFT_0430at 412.405 kb on - strandat 412.665 kb on - strand, within EX28DRAFT_0431at 412.703 kb on + strand, within EX28DRAFT_0431at 412.907 kb on - strand, within EX28DRAFT_0431at 413.083 kb on + strand, within EX28DRAFT_0431at 413.211 kb on + strand, within EX28DRAFT_0431at 413.211 kb on + strand, within EX28DRAFT_0431at 413.211 kb on + strand, within EX28DRAFT_0431at 414.150 kb on + strand, within EX28DRAFT_0432at 414.233 kb on + strand, within EX28DRAFT_0432at 414.236 kb on + strand, within EX28DRAFT_0432at 414.237 kb on - strand, within EX28DRAFT_0432at 414.237 kb on - strand, within EX28DRAFT_0432at 414.237 kb on - strand, within EX28DRAFT_0432at 414.325 kb on + strand, within EX28DRAFT_0432at 414.326 kb on - strand, within EX28DRAFT_0432at 414.326 kb on - strand, within EX28DRAFT_0432at 414.326 kb on - strand, within EX28DRAFT_0432at 414.326 kb on - strand, within EX28DRAFT_0432at 414.326 kb on - strand, within EX28DRAFT_0432at 414.327 kb on + strand, within EX28DRAFT_0432at 414.328 kb on - strand, within EX28DRAFT_0432

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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411,431 - -0.1
411,431 - +0.4
411,431 - +0.5
411,431 - -0.1
411,431 - +0.2
411,436 - +0.2
411,615 - EX28DRAFT_0430 0.14 -0.1
411,617 + EX28DRAFT_0430 0.14 +0.2
411,719 + EX28DRAFT_0430 0.25 -0.1
411,719 + EX28DRAFT_0430 0.25 -0.5
411,915 - EX28DRAFT_0430 0.46 +1.5
411,969 - EX28DRAFT_0430 0.52 +0.4
411,969 - EX28DRAFT_0430 0.52 -0.2
412,033 - EX28DRAFT_0430 0.59 -0.1
412,204 + EX28DRAFT_0430 0.78 +0.3
412,405 - -0.3
412,665 - EX28DRAFT_0431 0.21 -1.3
412,703 + EX28DRAFT_0431 0.25 -0.0
412,907 - EX28DRAFT_0431 0.42 +0.4
413,083 + EX28DRAFT_0431 0.57 -0.4
413,211 + EX28DRAFT_0431 0.68 -0.9
413,211 + EX28DRAFT_0431 0.68 +0.2
413,211 + EX28DRAFT_0431 0.68 +0.3
414,150 + EX28DRAFT_0432 0.61 +0.2
414,233 + EX28DRAFT_0432 0.70 +1.1
414,236 + EX28DRAFT_0432 0.70 +0.3
414,237 - EX28DRAFT_0432 0.70 +0.3
414,237 - EX28DRAFT_0432 0.70 +0.4
414,237 - EX28DRAFT_0432 0.70 +0.3
414,325 + EX28DRAFT_0432 0.79 -0.6
414,326 - EX28DRAFT_0432 0.80 +0.2
414,326 - EX28DRAFT_0432 0.80 +0.9
414,326 - EX28DRAFT_0432 0.80 +0.2
414,326 - EX28DRAFT_0432 0.80 -2.2
414,326 - EX28DRAFT_0432 0.80 +0.6
414,327 + EX28DRAFT_0432 0.80 -0.2
414,328 - EX28DRAFT_0432 0.80 +0.1

Or see this region's nucleotide sequence