Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0429

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0428 and EX28DRAFT_0429 are separated by 189 nucleotidesEX28DRAFT_0429 and EX28DRAFT_0430 are separated by 145 nucleotides EX28DRAFT_0428: EX28DRAFT_0428 - FAD/FMN-containing dehydrogenases, at 407,108 to 408,856 _0428 EX28DRAFT_0429: EX28DRAFT_0429 - Beta-glucosidase-related glycosidases, at 409,046 to 411,343 _0429 EX28DRAFT_0430: EX28DRAFT_0430 - Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), at 411,489 to 412,406 _0430 Position (kb) 409 410 411 412Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 408.174 kb on + strand, within EX28DRAFT_0428at 408.175 kb on - strand, within EX28DRAFT_0428at 408.175 kb on - strand, within EX28DRAFT_0428at 408.483 kb on + strand, within EX28DRAFT_0428at 408.643 kb on + strand, within EX28DRAFT_0428at 408.644 kb on - strand, within EX28DRAFT_0428at 408.892 kb on + strandat 408.893 kb on - strandat 408.909 kb on - strandat 408.928 kb on - strandat 408.928 kb on - strandat 409.037 kb on + strandat 409.038 kb on - strandat 409.066 kb on - strandat 409.120 kb on + strandat 409.576 kb on + strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.581 kb on - strand, within EX28DRAFT_0429at 409.584 kb on + strand, within EX28DRAFT_0429at 409.585 kb on - strand, within EX28DRAFT_0429at 409.710 kb on - strand, within EX28DRAFT_0429at 409.751 kb on + strand, within EX28DRAFT_0429at 409.752 kb on - strand, within EX28DRAFT_0429at 409.763 kb on + strand, within EX28DRAFT_0429at 410.012 kb on + strand, within EX28DRAFT_0429at 410.012 kb on + strand, within EX28DRAFT_0429at 410.013 kb on - strand, within EX28DRAFT_0429at 410.015 kb on + strand, within EX28DRAFT_0429at 410.024 kb on + strand, within EX28DRAFT_0429at 410.106 kb on - strand, within EX28DRAFT_0429at 410.133 kb on - strand, within EX28DRAFT_0429at 410.170 kb on + strand, within EX28DRAFT_0429at 410.170 kb on + strand, within EX28DRAFT_0429at 410.171 kb on - strand, within EX28DRAFT_0429at 410.810 kb on + strand, within EX28DRAFT_0429at 410.811 kb on - strand, within EX28DRAFT_0429at 410.811 kb on - strand, within EX28DRAFT_0429at 410.874 kb on - strand, within EX28DRAFT_0429at 410.925 kb on - strand, within EX28DRAFT_0429at 411.113 kb on + strand, within EX28DRAFT_0429at 411.113 kb on + strand, within EX28DRAFT_0429at 411.113 kb on + strand, within EX28DRAFT_0429at 411.260 kb on + strandat 411.260 kb on + strandat 411.387 kb on - strandat 411.395 kb on + strandat 411.431 kb on - strandat 411.431 kb on - strandat 411.431 kb on - strandat 411.431 kb on - strandat 411.431 kb on - strandat 411.436 kb on - strandat 411.615 kb on - strand, within EX28DRAFT_0430at 411.617 kb on + strand, within EX28DRAFT_0430at 411.719 kb on + strand, within EX28DRAFT_0430at 411.719 kb on + strand, within EX28DRAFT_0430at 411.915 kb on - strand, within EX28DRAFT_0430at 411.969 kb on - strand, within EX28DRAFT_0430at 411.969 kb on - strand, within EX28DRAFT_0430at 412.033 kb on - strand, within EX28DRAFT_0430at 412.204 kb on + strand, within EX28DRAFT_0430

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
408,174 + EX28DRAFT_0428 0.61 +0.3
408,175 - EX28DRAFT_0428 0.61 -0.1
408,175 - EX28DRAFT_0428 0.61 -0.1
408,483 + EX28DRAFT_0428 0.79 -0.2
408,643 + EX28DRAFT_0428 0.88 -0.1
408,644 - EX28DRAFT_0428 0.88 +0.4
408,892 + -0.1
408,893 - +1.5
408,909 - -0.0
408,928 - +0.5
408,928 - +0.9
409,037 + +0.4
409,038 - +0.3
409,066 - -1.3
409,120 + -0.4
409,576 + EX28DRAFT_0429 0.23 -0.5
409,581 - EX28DRAFT_0429 0.23 +0.1
409,581 - EX28DRAFT_0429 0.23 +0.4
409,581 - EX28DRAFT_0429 0.23 -0.3
409,581 - EX28DRAFT_0429 0.23 +1.5
409,581 - EX28DRAFT_0429 0.23 -0.5
409,584 + EX28DRAFT_0429 0.23 -0.2
409,585 - EX28DRAFT_0429 0.23 +0.0
409,710 - EX28DRAFT_0429 0.29 -0.2
409,751 + EX28DRAFT_0429 0.31 -0.1
409,752 - EX28DRAFT_0429 0.31 -0.4
409,763 + EX28DRAFT_0429 0.31 +1.2
410,012 + EX28DRAFT_0429 0.42 -1.1
410,012 + EX28DRAFT_0429 0.42 -0.2
410,013 - EX28DRAFT_0429 0.42 +0.3
410,015 + EX28DRAFT_0429 0.42 +1.3
410,024 + EX28DRAFT_0429 0.43 +0.1
410,106 - EX28DRAFT_0429 0.46 -4.9
410,133 - EX28DRAFT_0429 0.47 -0.4
410,170 + EX28DRAFT_0429 0.49 -0.2
410,170 + EX28DRAFT_0429 0.49 -0.8
410,171 - EX28DRAFT_0429 0.49 +0.8
410,810 + EX28DRAFT_0429 0.77 -1.0
410,811 - EX28DRAFT_0429 0.77 +0.4
410,811 - EX28DRAFT_0429 0.77 -1.1
410,874 - EX28DRAFT_0429 0.80 -0.4
410,925 - EX28DRAFT_0429 0.82 -0.3
411,113 + EX28DRAFT_0429 0.90 +0.2
411,113 + EX28DRAFT_0429 0.90 +0.8
411,113 + EX28DRAFT_0429 0.90 -0.5
411,260 + +0.0
411,260 + +0.5
411,387 - +0.6
411,395 + +0.1
411,431 - -0.1
411,431 - +0.4
411,431 - +0.5
411,431 - -0.1
411,431 - +0.2
411,436 - +0.2
411,615 - EX28DRAFT_0430 0.14 -0.1
411,617 + EX28DRAFT_0430 0.14 +0.2
411,719 + EX28DRAFT_0430 0.25 -0.1
411,719 + EX28DRAFT_0430 0.25 -0.5
411,915 - EX28DRAFT_0430 0.46 +1.5
411,969 - EX28DRAFT_0430 0.52 +0.4
411,969 - EX28DRAFT_0430 0.52 -0.2
412,033 - EX28DRAFT_0430 0.59 -0.1
412,204 + EX28DRAFT_0430 0.78 +0.3

Or see this region's nucleotide sequence