Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0399

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0398 and EX28DRAFT_0399 are separated by 97 nucleotidesEX28DRAFT_0399 and EX28DRAFT_0400 are separated by 180 nucleotides EX28DRAFT_0398: EX28DRAFT_0398 - conserved hypothetical integral membrane protein, at 372,874 to 373,920 _0398 EX28DRAFT_0399: EX28DRAFT_0399 - Transcriptional regulator, at 374,018 to 374,884 _0399 EX28DRAFT_0400: EX28DRAFT_0400 - Amino acid transporters, at 375,065 to 376,534 _0400 Position (kb) 374 375Strain fitness (log2 ratio) -2 -1 0 1 2 3at 373.092 kb on + strand, within EX28DRAFT_0398at 373.092 kb on + strand, within EX28DRAFT_0398at 373.098 kb on + strand, within EX28DRAFT_0398at 373.179 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.326 kb on - strand, within EX28DRAFT_0398at 373.326 kb on - strand, within EX28DRAFT_0398at 373.326 kb on - strand, within EX28DRAFT_0398at 373.370 kb on + strand, within EX28DRAFT_0398at 373.371 kb on - strand, within EX28DRAFT_0398at 373.371 kb on - strand, within EX28DRAFT_0398at 373.371 kb on - strand, within EX28DRAFT_0398at 373.732 kb on - strand, within EX28DRAFT_0398at 373.746 kb on + strand, within EX28DRAFT_0398at 373.746 kb on + strand, within EX28DRAFT_0398at 373.750 kb on + strand, within EX28DRAFT_0398at 373.891 kb on - strandat 373.903 kb on + strandat 373.904 kb on - strandat 373.904 kb on - strandat 373.921 kb on - strandat 373.983 kb on + strandat 374.217 kb on - strand, within EX28DRAFT_0399at 374.321 kb on + strand, within EX28DRAFT_0399at 374.321 kb on + strand, within EX28DRAFT_0399at 374.322 kb on - strand, within EX28DRAFT_0399at 374.882 kb on + strandat 374.883 kb on - strandat 374.943 kb on - strandat 374.950 kb on - strandat 374.950 kb on - strandat 374.950 kb on - strandat 374.950 kb on - strandat 374.954 kb on - strandat 374.955 kb on + strandat 374.986 kb on - strandat 375.025 kb on + strandat 375.026 kb on - strandat 375.045 kb on + strandat 375.102 kb on + strandat 375.103 kb on - strandat 375.227 kb on + strand, within EX28DRAFT_0400at 375.228 kb on - strand, within EX28DRAFT_0400at 375.230 kb on - strand, within EX28DRAFT_0400at 375.287 kb on + strand, within EX28DRAFT_0400at 375.317 kb on + strand, within EX28DRAFT_0400at 375.369 kb on - strand, within EX28DRAFT_0400at 375.374 kb on + strand, within EX28DRAFT_0400at 375.500 kb on + strand, within EX28DRAFT_0400at 375.501 kb on - strand, within EX28DRAFT_0400at 375.501 kb on - strand, within EX28DRAFT_0400at 375.501 kb on - strand, within EX28DRAFT_0400at 375.798 kb on + strand, within EX28DRAFT_0400at 375.821 kb on + strand, within EX28DRAFT_0400at 375.821 kb on + strand, within EX28DRAFT_0400at 375.821 kb on + strand, within EX28DRAFT_0400at 375.822 kb on - strand, within EX28DRAFT_0400at 375.822 kb on - strand, within EX28DRAFT_0400

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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373,092 + EX28DRAFT_0398 0.21 -0.2
373,092 + EX28DRAFT_0398 0.21 -0.5
373,098 + EX28DRAFT_0398 0.21 -0.6
373,179 + EX28DRAFT_0398 0.29 -0.0
373,325 + EX28DRAFT_0398 0.43 +0.2
373,325 + EX28DRAFT_0398 0.43 -0.1
373,325 + EX28DRAFT_0398 0.43 +0.8
373,325 + EX28DRAFT_0398 0.43 -0.2
373,326 - EX28DRAFT_0398 0.43 -0.4
373,326 - EX28DRAFT_0398 0.43 -0.1
373,326 - EX28DRAFT_0398 0.43 -0.1
373,370 + EX28DRAFT_0398 0.47 +0.2
373,371 - EX28DRAFT_0398 0.47 -0.5
373,371 - EX28DRAFT_0398 0.47 -0.6
373,371 - EX28DRAFT_0398 0.47 -2.4
373,732 - EX28DRAFT_0398 0.82 +2.2
373,746 + EX28DRAFT_0398 0.83 -1.6
373,746 + EX28DRAFT_0398 0.83 -1.1
373,750 + EX28DRAFT_0398 0.84 +1.3
373,891 - -0.1
373,903 + -0.2
373,904 - -0.4
373,904 - +0.8
373,921 - -2.1
373,983 + +0.7
374,217 - EX28DRAFT_0399 0.23 -2.0
374,321 + EX28DRAFT_0399 0.35 -0.9
374,321 + EX28DRAFT_0399 0.35 -1.3
374,322 - EX28DRAFT_0399 0.35 -0.0
374,882 + -0.0
374,883 - -0.8
374,943 - +0.9
374,950 - -0.6
374,950 - -0.1
374,950 - +0.8
374,950 - -0.0
374,954 - -0.1
374,955 + +1.3
374,986 - +0.1
375,025 + +0.0
375,026 - +0.5
375,045 + +0.5
375,102 + -0.5
375,103 - +1.4
375,227 + EX28DRAFT_0400 0.11 -0.4
375,228 - EX28DRAFT_0400 0.11 +2.9
375,230 - EX28DRAFT_0400 0.11 +0.3
375,287 + EX28DRAFT_0400 0.15 -0.9
375,317 + EX28DRAFT_0400 0.17 +0.4
375,369 - EX28DRAFT_0400 0.21 +0.4
375,374 + EX28DRAFT_0400 0.21 +0.0
375,500 + EX28DRAFT_0400 0.30 -0.2
375,501 - EX28DRAFT_0400 0.30 -0.5
375,501 - EX28DRAFT_0400 0.30 -0.7
375,501 - EX28DRAFT_0400 0.30 -0.1
375,798 + EX28DRAFT_0400 0.50 +0.4
375,821 + EX28DRAFT_0400 0.51 +0.3
375,821 + EX28DRAFT_0400 0.51 +0.2
375,821 + EX28DRAFT_0400 0.51 -0.5
375,822 - EX28DRAFT_0400 0.51 +0.3
375,822 - EX28DRAFT_0400 0.51 +0.6

Or see this region's nucleotide sequence