Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0295

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0294 and EX28DRAFT_0295 are separated by 226 nucleotidesEX28DRAFT_0295 and EX28DRAFT_0296 are separated by 88 nucleotidesEX28DRAFT_0296 and EX28DRAFT_0297 overlap by 4 nucleotides EX28DRAFT_0294: EX28DRAFT_0294 - lysine-arginine-ornithine-binding periplasmic protein, at 256,781 to 257,563 _0294 EX28DRAFT_0295: EX28DRAFT_0295 - lysine-arginine-ornithine-binding periplasmic protein, at 257,790 to 258,572 _0295 EX28DRAFT_0296: EX28DRAFT_0296 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 258,661 to 259,347 _0296 EX28DRAFT_0297: EX28DRAFT_0297 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 259,344 to 260,060 _0297 Position (kb) 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 256.821 kb on + strandat 256.838 kb on - strandat 256.868 kb on - strand, within EX28DRAFT_0294at 256.887 kb on - strand, within EX28DRAFT_0294at 256.887 kb on - strand, within EX28DRAFT_0294at 257.047 kb on + strand, within EX28DRAFT_0294at 257.285 kb on + strand, within EX28DRAFT_0294at 257.285 kb on + strand, within EX28DRAFT_0294at 257.401 kb on - strand, within EX28DRAFT_0294at 257.509 kb on + strandat 257.510 kb on - strandat 257.513 kb on + strandat 257.514 kb on - strandat 257.514 kb on - strandat 257.514 kb on - strandat 257.534 kb on + strandat 257.535 kb on - strandat 257.550 kb on + strandat 257.562 kb on - strandat 257.636 kb on + strandat 257.655 kb on + strandat 257.667 kb on + strandat 257.667 kb on + strandat 257.699 kb on - strandat 257.733 kb on + strandat 257.733 kb on + strandat 257.734 kb on - strandat 257.895 kb on + strand, within EX28DRAFT_0295at 257.896 kb on - strand, within EX28DRAFT_0295at 257.896 kb on - strand, within EX28DRAFT_0295at 257.896 kb on - strand, within EX28DRAFT_0295at 257.990 kb on + strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.994 kb on + strand, within EX28DRAFT_0295at 257.995 kb on - strand, within EX28DRAFT_0295at 257.995 kb on - strand, within EX28DRAFT_0295at 257.995 kb on - strand, within EX28DRAFT_0295at 258.056 kb on + strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.290 kb on + strand, within EX28DRAFT_0295at 258.290 kb on + strand, within EX28DRAFT_0295at 258.294 kb on + strand, within EX28DRAFT_0295at 258.294 kb on + strand, within EX28DRAFT_0295at 258.294 kb on + strand, within EX28DRAFT_0295at 258.295 kb on - strand, within EX28DRAFT_0295at 258.387 kb on + strand, within EX28DRAFT_0295at 258.388 kb on - strand, within EX28DRAFT_0295at 258.407 kb on + strand, within EX28DRAFT_0295at 258.411 kb on - strand, within EX28DRAFT_0295at 258.411 kb on - strand, within EX28DRAFT_0295at 258.522 kb on + strandat 258.586 kb on + strandat 258.684 kb on + strandat 258.690 kb on - strandat 258.750 kb on - strand, within EX28DRAFT_0296at 258.787 kb on - strand, within EX28DRAFT_0296at 258.814 kb on + strand, within EX28DRAFT_0296at 258.814 kb on + strand, within EX28DRAFT_0296at 258.815 kb on - strand, within EX28DRAFT_0296at 258.816 kb on + strand, within EX28DRAFT_0296at 258.817 kb on - strand, within EX28DRAFT_0296at 258.862 kb on - strand, within EX28DRAFT_0296at 258.951 kb on + strand, within EX28DRAFT_0296at 258.952 kb on - strand, within EX28DRAFT_0296at 258.952 kb on - strand, within EX28DRAFT_0296at 258.952 kb on - strand, within EX28DRAFT_0296at 258.952 kb on - strand, within EX28DRAFT_0296at 259.007 kb on - strand, within EX28DRAFT_0296at 259.007 kb on - strand, within EX28DRAFT_0296at 259.057 kb on - strand, within EX28DRAFT_0296at 259.057 kb on - strand, within EX28DRAFT_0296at 259.191 kb on + strand, within EX28DRAFT_0296at 259.261 kb on + strand, within EX28DRAFT_0296at 259.261 kb on + strand, within EX28DRAFT_0296at 259.262 kb on - strand, within EX28DRAFT_0296at 259.534 kb on - strand, within EX28DRAFT_0297at 259.534 kb on - strand, within EX28DRAFT_0297at 259.557 kb on + strand, within EX28DRAFT_0297

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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256,821 + -2.4
256,838 - +0.5
256,868 - EX28DRAFT_0294 0.11 +0.8
256,887 - EX28DRAFT_0294 0.14 +0.3
256,887 - EX28DRAFT_0294 0.14 +1.3
257,047 + EX28DRAFT_0294 0.34 -0.4
257,285 + EX28DRAFT_0294 0.64 +0.3
257,285 + EX28DRAFT_0294 0.64 +0.3
257,401 - EX28DRAFT_0294 0.79 +0.4
257,509 + +0.2
257,510 - +0.6
257,513 + +0.7
257,514 - -0.7
257,514 - -0.4
257,514 - +1.1
257,534 + -0.0
257,535 - +0.0
257,550 + -0.0
257,562 - -1.2
257,636 + +3.1
257,655 + +0.2
257,667 + +0.5
257,667 + +0.5
257,699 - -0.0
257,733 + -3.1
257,733 + -0.9
257,734 - +1.3
257,895 + EX28DRAFT_0295 0.13 -0.0
257,896 - EX28DRAFT_0295 0.14 +1.0
257,896 - EX28DRAFT_0295 0.14 -0.5
257,896 - EX28DRAFT_0295 0.14 -0.4
257,990 + EX28DRAFT_0295 0.26 -0.7
257,991 - EX28DRAFT_0295 0.26 -1.5
257,991 - EX28DRAFT_0295 0.26 +0.3
257,991 - EX28DRAFT_0295 0.26 -0.0
257,991 - EX28DRAFT_0295 0.26 +1.1
257,994 + EX28DRAFT_0295 0.26 -2.6
257,995 - EX28DRAFT_0295 0.26 -0.6
257,995 - EX28DRAFT_0295 0.26 -0.6
257,995 - EX28DRAFT_0295 0.26 +0.2
258,056 + EX28DRAFT_0295 0.34 +0.1
258,057 - EX28DRAFT_0295 0.34 -2.0
258,057 - EX28DRAFT_0295 0.34 -0.9
258,057 - EX28DRAFT_0295 0.34 -0.8
258,057 - EX28DRAFT_0295 0.34 -0.9
258,290 + EX28DRAFT_0295 0.64 -0.1
258,290 + EX28DRAFT_0295 0.64 +0.5
258,294 + EX28DRAFT_0295 0.64 -0.3
258,294 + EX28DRAFT_0295 0.64 -0.9
258,294 + EX28DRAFT_0295 0.64 -1.7
258,295 - EX28DRAFT_0295 0.64 -0.3
258,387 + EX28DRAFT_0295 0.76 +0.1
258,388 - EX28DRAFT_0295 0.76 +0.6
258,407 + EX28DRAFT_0295 0.79 -0.7
258,411 - EX28DRAFT_0295 0.79 -0.0
258,411 - EX28DRAFT_0295 0.79 -0.5
258,522 + -0.4
258,586 + -0.5
258,684 + +0.1
258,690 - +0.3
258,750 - EX28DRAFT_0296 0.13 -0.2
258,787 - EX28DRAFT_0296 0.18 -0.5
258,814 + EX28DRAFT_0296 0.22 +0.5
258,814 + EX28DRAFT_0296 0.22 +0.1
258,815 - EX28DRAFT_0296 0.22 -0.0
258,816 + EX28DRAFT_0296 0.23 +1.1
258,817 - EX28DRAFT_0296 0.23 +1.0
258,862 - EX28DRAFT_0296 0.29 -0.4
258,951 + EX28DRAFT_0296 0.42 +0.3
258,952 - EX28DRAFT_0296 0.42 -0.0
258,952 - EX28DRAFT_0296 0.42 -0.7
258,952 - EX28DRAFT_0296 0.42 +0.3
258,952 - EX28DRAFT_0296 0.42 -0.4
259,007 - EX28DRAFT_0296 0.50 -0.3
259,007 - EX28DRAFT_0296 0.50 +0.2
259,057 - EX28DRAFT_0296 0.58 -0.2
259,057 - EX28DRAFT_0296 0.58 +0.7
259,191 + EX28DRAFT_0296 0.77 +0.4
259,261 + EX28DRAFT_0296 0.87 +0.1
259,261 + EX28DRAFT_0296 0.87 +0.8
259,262 - EX28DRAFT_0296 0.87 -0.1
259,534 - EX28DRAFT_0297 0.26 +0.3
259,534 - EX28DRAFT_0297 0.26 +0.6
259,557 + EX28DRAFT_0297 0.30 -0.1

Or see this region's nucleotide sequence