Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0244 and EX28DRAFT_0245 overlap by 4 nucleotides EX28DRAFT_0245 and EX28DRAFT_0246 overlap by 4 nucleotides EX28DRAFT_0246 and EX28DRAFT_0247 are separated by 5 nucleotides EX28DRAFT_0247 and EX28DRAFT_0248 are separated by 157 nucleotides
EX28DRAFT_0244: EX28DRAFT_0244 - type VI secretion protein, VC_A0114 family, at 198,628 to 199,968
_0244
EX28DRAFT_0245: EX28DRAFT_0245 - type IV / VI secretion system protein, DotU family, at 199,965 to 200,654
_0245
EX28DRAFT_0246: EX28DRAFT_0246 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 200,651 to 202,357
_0246
EX28DRAFT_0247: EX28DRAFT_0247 - type VI secretion system effector, Hcp1 family, at 202,363 to 202,854
_0247
EX28DRAFT_0248: EX28DRAFT_0248 - type VI secretion ATPase, ClpV1 family, at 203,012 to 205,666
_0248
Position (kb) 200
201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 199.663 kb on + strand, within EX28DRAFT_0244 at 199.728 kb on + strand, within EX28DRAFT_0244 at 199.729 kb on - strand, within EX28DRAFT_0244 at 199.808 kb on + strand, within EX28DRAFT_0244 at 199.809 kb on - strand, within EX28DRAFT_0244 at 199.977 kb on - strand at 200.003 kb on + strand at 200.024 kb on + strand at 200.024 kb on + strand at 200.025 kb on - strand at 200.025 kb on - strand at 200.377 kb on + strand, within EX28DRAFT_0245 at 200.555 kb on + strand, within EX28DRAFT_0245 at 200.556 kb on - strand, within EX28DRAFT_0245 at 200.646 kb on - strand at 200.647 kb on + strand at 200.648 kb on - strand at 200.793 kb on - strand at 200.793 kb on - strand at 200.858 kb on + strand, within EX28DRAFT_0246 at 200.859 kb on - strand, within EX28DRAFT_0246 at 200.859 kb on - strand, within EX28DRAFT_0246 at 200.922 kb on + strand, within EX28DRAFT_0246 at 200.922 kb on + strand, within EX28DRAFT_0246 at 200.923 kb on - strand, within EX28DRAFT_0246 at 200.994 kb on + strand, within EX28DRAFT_0246 at 201.704 kb on - strand, within EX28DRAFT_0246 at 201.705 kb on + strand, within EX28DRAFT_0246 at 201.705 kb on + strand, within EX28DRAFT_0246 at 201.705 kb on + strand, within EX28DRAFT_0246 at 201.806 kb on - strand, within EX28DRAFT_0246 at 201.856 kb on - strand, within EX28DRAFT_0246 at 201.859 kb on + strand, within EX28DRAFT_0246 at 201.859 kb on + strand, within EX28DRAFT_0246 at 201.860 kb on - strand, within EX28DRAFT_0246 at 201.955 kb on + strand, within EX28DRAFT_0246 at 201.955 kb on + strand, within EX28DRAFT_0246 at 201.955 kb on + strand, within EX28DRAFT_0246 at 201.955 kb on + strand, within EX28DRAFT_0246 at 201.956 kb on - strand, within EX28DRAFT_0246 at 202.098 kb on + strand, within EX28DRAFT_0246 at 202.339 kb on - strand at 202.359 kb on + strand at 202.414 kb on - strand, within EX28DRAFT_0247 at 202.474 kb on - strand, within EX28DRAFT_0247 at 202.474 kb on - strand, within EX28DRAFT_0247 at 202.481 kb on - strand, within EX28DRAFT_0247 at 202.481 kb on - strand, within EX28DRAFT_0247 at 202.579 kb on + strand, within EX28DRAFT_0247 at 202.580 kb on - strand, within EX28DRAFT_0247 at 202.631 kb on - strand, within EX28DRAFT_0247 at 202.663 kb on + strand, within EX28DRAFT_0247 at 202.718 kb on - strand, within EX28DRAFT_0247 at 202.718 kb on - strand, within EX28DRAFT_0247 at 202.718 kb on - strand, within EX28DRAFT_0247 at 203.035 kb on - strand at 203.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 199,663 + EX28DRAFT_0244 0.77 +1.8 199,728 + EX28DRAFT_0244 0.82 +1.9 199,729 - EX28DRAFT_0244 0.82 +3.1 199,808 + EX28DRAFT_0244 0.88 +0.3 199,809 - EX28DRAFT_0244 0.88 +1.4 199,977 - +0.5 200,003 + +0.4 200,024 + +0.8 200,024 + +0.5 200,025 - +0.6 200,025 - -0.0 200,377 + EX28DRAFT_0245 0.60 +0.2 200,555 + EX28DRAFT_0245 0.86 -0.3 200,556 - EX28DRAFT_0245 0.86 +0.2 200,646 - -0.1 200,647 + +0.5 200,648 - +0.9 200,793 - +1.6 200,793 - -0.5 200,858 + EX28DRAFT_0246 0.12 -0.3 200,859 - EX28DRAFT_0246 0.12 +0.8 200,859 - EX28DRAFT_0246 0.12 -1.6 200,922 + EX28DRAFT_0246 0.16 -1.0 200,922 + EX28DRAFT_0246 0.16 +0.0 200,923 - EX28DRAFT_0246 0.16 +0.1 200,994 + EX28DRAFT_0246 0.20 -0.2 201,704 - EX28DRAFT_0246 0.62 +0.0 201,705 + EX28DRAFT_0246 0.62 -0.1 201,705 + EX28DRAFT_0246 0.62 +0.7 201,705 + EX28DRAFT_0246 0.62 +0.3 201,806 - EX28DRAFT_0246 0.68 -0.5 201,856 - EX28DRAFT_0246 0.71 -0.1 201,859 + EX28DRAFT_0246 0.71 +1.0 201,859 + EX28DRAFT_0246 0.71 +0.2 201,860 - EX28DRAFT_0246 0.71 -0.3 201,955 + EX28DRAFT_0246 0.76 +0.0 201,955 + EX28DRAFT_0246 0.76 +3.0 201,955 + EX28DRAFT_0246 0.76 -0.4 201,955 + EX28DRAFT_0246 0.76 -0.3 201,956 - EX28DRAFT_0246 0.76 +1.9 202,098 + EX28DRAFT_0246 0.85 +0.7 202,339 - -0.2 202,359 + +0.2 202,414 - EX28DRAFT_0247 0.10 +0.2 202,474 - EX28DRAFT_0247 0.23 -1.4 202,474 - EX28DRAFT_0247 0.23 -0.2 202,481 - EX28DRAFT_0247 0.24 +0.1 202,481 - EX28DRAFT_0247 0.24 -1.0 202,579 + EX28DRAFT_0247 0.44 -2.0 202,580 - EX28DRAFT_0247 0.44 +0.5 202,631 - EX28DRAFT_0247 0.54 +0.2 202,663 + EX28DRAFT_0247 0.61 -0.3 202,718 - EX28DRAFT_0247 0.72 +0.5 202,718 - EX28DRAFT_0247 0.72 +0.5 202,718 - EX28DRAFT_0247 0.72 +0.0 203,035 - +1.0 203,134 - -0.8
Or see this region's nucleotide sequence