Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0233

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0232 and EX28DRAFT_0233 are separated by 33 nucleotidesEX28DRAFT_0233 and EX28DRAFT_0234 are separated by 127 nucleotides EX28DRAFT_0232: EX28DRAFT_0232 - NRAMP (natural resistance-associated macrophage protein) metal ion transporters, at 183,248 to 184,486 _0232 EX28DRAFT_0233: EX28DRAFT_0233 - Protein of unknown function (DUF2502), at 184,520 to 184,876 _0233 EX28DRAFT_0234: EX28DRAFT_0234 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 185,004 to 186,002 _0234 Position (kb) 184 185Strain fitness (log2 ratio) -1 0 1at 183.802 kb on + strand, within EX28DRAFT_0232at 183.810 kb on + strand, within EX28DRAFT_0232at 183.942 kb on - strand, within EX28DRAFT_0232at 184.210 kb on + strand, within EX28DRAFT_0232at 184.484 kb on + strandat 184.522 kb on - strandat 184.642 kb on + strand, within EX28DRAFT_0233at 184.642 kb on + strand, within EX28DRAFT_0233at 184.644 kb on + strand, within EX28DRAFT_0233at 184.645 kb on - strand, within EX28DRAFT_0233at 184.750 kb on - strand, within EX28DRAFT_0233at 184.759 kb on - strand, within EX28DRAFT_0233at 184.787 kb on + strand, within EX28DRAFT_0233at 184.848 kb on - strandat 184.876 kb on + strandat 184.925 kb on + strandat 184.928 kb on + strandat 184.929 kb on - strandat 184.939 kb on - strandat 185.027 kb on + strandat 185.106 kb on - strand, within EX28DRAFT_0234at 185.146 kb on - strand, within EX28DRAFT_0234at 185.148 kb on + strand, within EX28DRAFT_0234at 185.214 kb on + strand, within EX28DRAFT_0234at 185.215 kb on - strand, within EX28DRAFT_0234at 185.348 kb on + strand, within EX28DRAFT_0234at 185.348 kb on + strand, within EX28DRAFT_0234at 185.462 kb on + strand, within EX28DRAFT_0234at 185.494 kb on + strand, within EX28DRAFT_0234at 185.513 kb on - strand, within EX28DRAFT_0234at 185.603 kb on + strand, within EX28DRAFT_0234at 185.603 kb on + strand, within EX28DRAFT_0234at 185.612 kb on - strand, within EX28DRAFT_0234at 185.612 kb on - strand, within EX28DRAFT_0234at 185.612 kb on - strand, within EX28DRAFT_0234at 185.702 kb on + strand, within EX28DRAFT_0234at 185.703 kb on - strand, within EX28DRAFT_0234at 185.705 kb on - strand, within EX28DRAFT_0234at 185.806 kb on + strand, within EX28DRAFT_0234at 185.806 kb on + strand, within EX28DRAFT_0234at 185.806 kb on + strand, within EX28DRAFT_0234at 185.807 kb on - strand, within EX28DRAFT_0234

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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183,802 + EX28DRAFT_0232 0.45 +0.2
183,810 + EX28DRAFT_0232 0.45 -0.6
183,942 - EX28DRAFT_0232 0.56 -0.1
184,210 + EX28DRAFT_0232 0.78 +0.1
184,484 + +0.3
184,522 - +0.2
184,642 + EX28DRAFT_0233 0.34 +0.2
184,642 + EX28DRAFT_0233 0.34 +0.8
184,644 + EX28DRAFT_0233 0.35 +1.3
184,645 - EX28DRAFT_0233 0.35 +1.5
184,750 - EX28DRAFT_0233 0.64 -0.2
184,759 - EX28DRAFT_0233 0.67 +0.5
184,787 + EX28DRAFT_0233 0.75 -0.0
184,848 - +0.4
184,876 + -1.3
184,925 + +0.2
184,928 + -0.4
184,929 - +0.3
184,939 - +0.6
185,027 + +0.1
185,106 - EX28DRAFT_0234 0.10 -0.6
185,146 - EX28DRAFT_0234 0.14 -0.7
185,148 + EX28DRAFT_0234 0.14 -0.2
185,214 + EX28DRAFT_0234 0.21 -0.1
185,215 - EX28DRAFT_0234 0.21 +0.3
185,348 + EX28DRAFT_0234 0.34 +0.1
185,348 + EX28DRAFT_0234 0.34 +0.2
185,462 + EX28DRAFT_0234 0.46 -1.0
185,494 + EX28DRAFT_0234 0.49 -0.5
185,513 - EX28DRAFT_0234 0.51 -0.1
185,603 + EX28DRAFT_0234 0.60 -0.1
185,603 + EX28DRAFT_0234 0.60 +0.8
185,612 - EX28DRAFT_0234 0.61 -1.2
185,612 - EX28DRAFT_0234 0.61 +0.3
185,612 - EX28DRAFT_0234 0.61 +0.3
185,702 + EX28DRAFT_0234 0.70 -0.7
185,703 - EX28DRAFT_0234 0.70 +0.0
185,705 - EX28DRAFT_0234 0.70 -0.6
185,806 + EX28DRAFT_0234 0.80 +1.0
185,806 + EX28DRAFT_0234 0.80 -1.3
185,806 + EX28DRAFT_0234 0.80 -0.2
185,807 - EX28DRAFT_0234 0.80 +1.3

Or see this region's nucleotide sequence