Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0164

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0162 and EX28DRAFT_0163 overlap by 4 nucleotidesEX28DRAFT_0163 and EX28DRAFT_0164 are separated by 370 nucleotidesEX28DRAFT_0164 and EX28DRAFT_0165 are separated by 4 nucleotides EX28DRAFT_0162: EX28DRAFT_0162 - Transcriptional regulator, at 108,574 to 109,464 _0162 EX28DRAFT_0163: EX28DRAFT_0163 - Protein of unknown function (DUF2633), at 109,461 to 109,631 _0163 EX28DRAFT_0164: EX28DRAFT_0164 - FOG: EAL domain, at 110,002 to 112,242 _0164 EX28DRAFT_0165: EX28DRAFT_0165 - exopolyphosphatase, at 112,247 to 113,785 _0165 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 109.084 kb on - strand, within EX28DRAFT_0162at 109.293 kb on + strand, within EX28DRAFT_0162at 109.293 kb on + strand, within EX28DRAFT_0162at 109.293 kb on + strand, within EX28DRAFT_0162at 109.294 kb on - strand, within EX28DRAFT_0162at 109.388 kb on + strandat 109.588 kb on - strand, within EX28DRAFT_0163at 109.689 kb on - strandat 109.731 kb on - strandat 109.731 kb on - strandat 109.785 kb on + strandat 109.800 kb on - strandat 109.837 kb on + strandat 109.889 kb on + strandat 109.906 kb on - strandat 110.001 kb on + strandat 110.001 kb on + strandat 110.001 kb on + strandat 110.058 kb on + strandat 110.076 kb on - strandat 110.100 kb on + strandat 110.101 kb on - strandat 110.137 kb on + strandat 110.137 kb on + strandat 110.138 kb on - strandat 110.140 kb on + strandat 110.140 kb on + strandat 110.141 kb on - strandat 110.141 kb on - strandat 110.144 kb on + strandat 110.208 kb on - strandat 110.220 kb on + strandat 110.227 kb on + strand, within EX28DRAFT_0164at 110.434 kb on + strand, within EX28DRAFT_0164at 110.446 kb on + strand, within EX28DRAFT_0164at 110.446 kb on + strand, within EX28DRAFT_0164at 110.446 kb on + strand, within EX28DRAFT_0164at 110.475 kb on - strand, within EX28DRAFT_0164at 110.475 kb on - strand, within EX28DRAFT_0164at 110.506 kb on + strand, within EX28DRAFT_0164at 110.551 kb on + strand, within EX28DRAFT_0164at 110.551 kb on + strand, within EX28DRAFT_0164at 110.552 kb on - strand, within EX28DRAFT_0164at 110.735 kb on - strand, within EX28DRAFT_0164at 110.805 kb on + strand, within EX28DRAFT_0164at 110.832 kb on + strand, within EX28DRAFT_0164at 110.872 kb on + strand, within EX28DRAFT_0164at 110.873 kb on - strand, within EX28DRAFT_0164at 110.932 kb on + strand, within EX28DRAFT_0164at 110.932 kb on + strand, within EX28DRAFT_0164at 110.933 kb on - strand, within EX28DRAFT_0164at 110.934 kb on + strand, within EX28DRAFT_0164at 110.935 kb on - strand, within EX28DRAFT_0164at 110.935 kb on - strand, within EX28DRAFT_0164at 111.194 kb on - strand, within EX28DRAFT_0164at 111.228 kb on + strand, within EX28DRAFT_0164at 111.334 kb on + strand, within EX28DRAFT_0164at 111.335 kb on - strand, within EX28DRAFT_0164at 111.335 kb on - strand, within EX28DRAFT_0164at 111.335 kb on - strand, within EX28DRAFT_0164at 111.335 kb on - strand, within EX28DRAFT_0164at 111.340 kb on + strand, within EX28DRAFT_0164at 111.340 kb on + strand, within EX28DRAFT_0164at 111.341 kb on - strand, within EX28DRAFT_0164at 111.341 kb on - strand, within EX28DRAFT_0164at 111.367 kb on + strand, within EX28DRAFT_0164at 111.602 kb on + strand, within EX28DRAFT_0164at 111.817 kb on + strand, within EX28DRAFT_0164at 111.818 kb on - strand, within EX28DRAFT_0164at 111.891 kb on - strand, within EX28DRAFT_0164at 111.927 kb on + strand, within EX28DRAFT_0164at 111.928 kb on - strand, within EX28DRAFT_0164at 111.928 kb on - strand, within EX28DRAFT_0164at 111.964 kb on + strand, within EX28DRAFT_0164at 111.964 kb on + strand, within EX28DRAFT_0164at 111.965 kb on - strand, within EX28DRAFT_0164at 112.112 kb on - strandat 112.130 kb on + strandat 112.130 kb on + strandat 112.131 kb on - strandat 112.131 kb on - strandat 112.135 kb on - strandat 112.162 kb on + strandat 112.162 kb on + strandat 112.163 kb on - strandat 112.627 kb on - strand, within EX28DRAFT_0165at 112.755 kb on + strand, within EX28DRAFT_0165at 112.756 kb on - strand, within EX28DRAFT_0165at 112.809 kb on + strand, within EX28DRAFT_0165at 112.926 kb on - strand, within EX28DRAFT_0165at 113.030 kb on - strand, within EX28DRAFT_0165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
109,084 - EX28DRAFT_0162 0.57 +0.4
109,293 + EX28DRAFT_0162 0.81 -1.4
109,293 + EX28DRAFT_0162 0.81 -0.9
109,293 + EX28DRAFT_0162 0.81 +0.3
109,294 - EX28DRAFT_0162 0.81 -1.0
109,388 + -0.6
109,588 - EX28DRAFT_0163 0.74 -0.0
109,689 - -0.6
109,731 - +1.0
109,731 - +0.1
109,785 + -0.5
109,800 - +0.2
109,837 + -0.8
109,889 + -0.2
109,906 - +0.2
110,001 + +0.1
110,001 + +0.4
110,001 + -0.4
110,058 + +0.1
110,076 - -0.1
110,100 + +0.3
110,101 - +0.3
110,137 + -0.3
110,137 + +0.1
110,138 - -0.1
110,140 + -0.4
110,140 + -0.0
110,141 - -0.7
110,141 - +0.2
110,144 + -1.0
110,208 - +0.0
110,220 + +0.1
110,227 + EX28DRAFT_0164 0.10 +0.5
110,434 + EX28DRAFT_0164 0.19 +0.1
110,446 + EX28DRAFT_0164 0.20 -1.5
110,446 + EX28DRAFT_0164 0.20 -0.2
110,446 + EX28DRAFT_0164 0.20 +0.3
110,475 - EX28DRAFT_0164 0.21 +0.3
110,475 - EX28DRAFT_0164 0.21 +0.0
110,506 + EX28DRAFT_0164 0.22 +2.0
110,551 + EX28DRAFT_0164 0.24 +0.3
110,551 + EX28DRAFT_0164 0.24 +0.0
110,552 - EX28DRAFT_0164 0.25 -0.0
110,735 - EX28DRAFT_0164 0.33 +0.9
110,805 + EX28DRAFT_0164 0.36 +1.1
110,832 + EX28DRAFT_0164 0.37 +0.6
110,872 + EX28DRAFT_0164 0.39 +1.1
110,873 - EX28DRAFT_0164 0.39 +0.0
110,932 + EX28DRAFT_0164 0.41 +0.9
110,932 + EX28DRAFT_0164 0.41 +0.2
110,933 - EX28DRAFT_0164 0.42 +0.3
110,934 + EX28DRAFT_0164 0.42 -0.4
110,935 - EX28DRAFT_0164 0.42 +0.6
110,935 - EX28DRAFT_0164 0.42 -0.0
111,194 - EX28DRAFT_0164 0.53 +0.2
111,228 + EX28DRAFT_0164 0.55 +0.3
111,334 + EX28DRAFT_0164 0.59 +0.3
111,335 - EX28DRAFT_0164 0.59 -0.5
111,335 - EX28DRAFT_0164 0.59 -0.4
111,335 - EX28DRAFT_0164 0.59 +0.4
111,335 - EX28DRAFT_0164 0.59 +0.3
111,340 + EX28DRAFT_0164 0.60 +0.1
111,340 + EX28DRAFT_0164 0.60 +0.3
111,341 - EX28DRAFT_0164 0.60 +1.6
111,341 - EX28DRAFT_0164 0.60 -0.3
111,367 + EX28DRAFT_0164 0.61 +0.3
111,602 + EX28DRAFT_0164 0.71 -0.2
111,817 + EX28DRAFT_0164 0.81 +0.0
111,818 - EX28DRAFT_0164 0.81 -0.1
111,891 - EX28DRAFT_0164 0.84 -1.4
111,927 + EX28DRAFT_0164 0.86 -0.2
111,928 - EX28DRAFT_0164 0.86 -0.3
111,928 - EX28DRAFT_0164 0.86 -2.3
111,964 + EX28DRAFT_0164 0.88 +1.1
111,964 + EX28DRAFT_0164 0.88 +0.3
111,965 - EX28DRAFT_0164 0.88 +0.1
112,112 - +0.0
112,130 + -1.1
112,130 + +0.2
112,131 - -0.1
112,131 - -0.3
112,135 - +0.2
112,162 + +0.8
112,162 + +0.0
112,163 - +0.1
112,627 - EX28DRAFT_0165 0.25 -0.6
112,755 + EX28DRAFT_0165 0.33 +0.5
112,756 - EX28DRAFT_0165 0.33 +0.4
112,809 + EX28DRAFT_0165 0.37 -0.6
112,926 - EX28DRAFT_0165 0.44 -1.2
113,030 - EX28DRAFT_0165 0.51 -0.6

Or see this region's nucleotide sequence