Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0071

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0069 and EX28DRAFT_0070 are separated by 11 nucleotidesEX28DRAFT_0070 and EX28DRAFT_0071 overlap by 16 nucleotidesEX28DRAFT_0071 and EX28DRAFT_0072 are separated by 422 nucleotides EX28DRAFT_0069: EX28DRAFT_0069 - Superfamily II DNA and RNA helicases, at 10,347 to 11,675 _0069 EX28DRAFT_0070: EX28DRAFT_0070 - Predicted O-methyltransferase, at 11,687 to 12,545 _0070 EX28DRAFT_0071: EX28DRAFT_0071 - L-aspartate oxidase (EC 1.4.3.16), at 12,530 to 14,149 _0071 EX28DRAFT_0072: EX28DRAFT_0072 - RNA polymerase sigma factor RpoE, at 14,572 to 15,147 _0072 Position (kb) 12 13 14 15Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 11.681 kb on - strandat 11.681 kb on - strandat 11.702 kb on + strandat 11.703 kb on - strandat 11.704 kb on + strandat 11.704 kb on + strandat 11.704 kb on + strandat 11.705 kb on - strandat 11.720 kb on - strandat 11.736 kb on + strandat 11.737 kb on - strandat 11.737 kb on - strandat 11.771 kb on + strandat 11.771 kb on + strandat 11.792 kb on - strand, within EX28DRAFT_0070at 11.792 kb on - strand, within EX28DRAFT_0070at 11.948 kb on + strand, within EX28DRAFT_0070at 11.948 kb on + strand, within EX28DRAFT_0070at 11.949 kb on - strand, within EX28DRAFT_0070at 12.072 kb on - strand, within EX28DRAFT_0070at 12.231 kb on + strand, within EX28DRAFT_0070at 12.231 kb on + strand, within EX28DRAFT_0070at 12.232 kb on - strand, within EX28DRAFT_0070at 12.233 kb on + strand, within EX28DRAFT_0070at 12.252 kb on - strand, within EX28DRAFT_0070at 12.386 kb on + strand, within EX28DRAFT_0070at 12.386 kb on + strand, within EX28DRAFT_0070at 12.507 kb on + strandat 12.539 kb on + strandat 12.539 kb on + strandat 12.543 kb on + strandat 12.543 kb on + strandat 12.544 kb on - strandat 12.604 kb on + strandat 12.606 kb on + strandat 12.606 kb on + strandat 12.606 kb on + strandat 12.606 kb on + strandat 12.628 kb on + strandat 12.718 kb on - strand, within EX28DRAFT_0071at 12.720 kb on + strand, within EX28DRAFT_0071at 12.721 kb on - strand, within EX28DRAFT_0071at 12.802 kb on - strand, within EX28DRAFT_0071at 12.812 kb on - strand, within EX28DRAFT_0071at 12.812 kb on - strand, within EX28DRAFT_0071at 12.812 kb on - strand, within EX28DRAFT_0071at 12.821 kb on + strand, within EX28DRAFT_0071at 12.821 kb on + strand, within EX28DRAFT_0071at 12.822 kb on - strand, within EX28DRAFT_0071at 12.992 kb on - strand, within EX28DRAFT_0071at 13.017 kb on + strand, within EX28DRAFT_0071at 13.018 kb on - strand, within EX28DRAFT_0071at 13.038 kb on + strand, within EX28DRAFT_0071at 13.039 kb on - strand, within EX28DRAFT_0071at 13.039 kb on - strand, within EX28DRAFT_0071at 13.050 kb on - strand, within EX28DRAFT_0071at 13.057 kb on + strand, within EX28DRAFT_0071at 13.058 kb on - strand, within EX28DRAFT_0071at 13.093 kb on + strand, within EX28DRAFT_0071at 13.093 kb on + strand, within EX28DRAFT_0071at 13.093 kb on + strand, within EX28DRAFT_0071at 13.095 kb on + strand, within EX28DRAFT_0071at 13.096 kb on - strand, within EX28DRAFT_0071at 13.096 kb on - strand, within EX28DRAFT_0071at 13.096 kb on - strand, within EX28DRAFT_0071at 13.133 kb on + strand, within EX28DRAFT_0071at 13.221 kb on + strand, within EX28DRAFT_0071at 13.222 kb on - strand, within EX28DRAFT_0071at 13.512 kb on + strand, within EX28DRAFT_0071at 13.513 kb on - strand, within EX28DRAFT_0071at 13.519 kb on - strand, within EX28DRAFT_0071at 13.585 kb on + strand, within EX28DRAFT_0071at 13.652 kb on - strand, within EX28DRAFT_0071at 13.693 kb on + strand, within EX28DRAFT_0071at 13.693 kb on + strand, within EX28DRAFT_0071at 13.804 kb on - strand, within EX28DRAFT_0071at 13.943 kb on - strand, within EX28DRAFT_0071at 14.007 kb on + strandat 14.015 kb on - strandat 14.117 kb on + strandat 14.206 kb on + strandat 14.206 kb on + strandat 14.206 kb on + strandat 14.206 kb on + strandat 14.207 kb on - strandat 14.207 kb on - strandat 14.207 kb on - strandat 14.207 kb on - strandat 14.272 kb on - strandat 14.328 kb on + strandat 14.329 kb on - strandat 14.406 kb on + strandat 14.406 kb on + strandat 14.406 kb on + strandat 14.406 kb on + strandat 14.407 kb on - strandat 15.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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11,681 - +0.6
11,681 - +0.1
11,702 + -0.4
11,703 - -0.3
11,704 + +0.2
11,704 + +0.1
11,704 + +0.4
11,705 - +0.4
11,720 - -0.0
11,736 + +0.3
11,737 - -0.2
11,737 - -0.0
11,771 + +0.6
11,771 + -0.1
11,792 - EX28DRAFT_0070 0.12 -0.5
11,792 - EX28DRAFT_0070 0.12 +0.8
11,948 + EX28DRAFT_0070 0.30 -0.3
11,948 + EX28DRAFT_0070 0.30 -0.3
11,949 - EX28DRAFT_0070 0.31 -0.4
12,072 - EX28DRAFT_0070 0.45 -0.1
12,231 + EX28DRAFT_0070 0.63 -0.5
12,231 + EX28DRAFT_0070 0.63 +0.7
12,232 - EX28DRAFT_0070 0.63 +0.5
12,233 + EX28DRAFT_0070 0.64 -0.0
12,252 - EX28DRAFT_0070 0.66 -1.3
12,386 + EX28DRAFT_0070 0.81 -0.3
12,386 + EX28DRAFT_0070 0.81 +0.6
12,507 + +0.0
12,539 + +0.3
12,539 + +0.1
12,543 + -0.2
12,543 + +0.3
12,544 - +1.0
12,604 + -1.1
12,606 + -0.8
12,606 + -0.0
12,606 + -1.5
12,606 + -1.2
12,628 + -1.0
12,718 - EX28DRAFT_0071 0.12 -3.2
12,720 + EX28DRAFT_0071 0.12 -2.6
12,721 - EX28DRAFT_0071 0.12 -0.3
12,802 - EX28DRAFT_0071 0.17 -0.9
12,812 - EX28DRAFT_0071 0.17 -3.3
12,812 - EX28DRAFT_0071 0.17 -2.3
12,812 - EX28DRAFT_0071 0.17 -3.9
12,821 + EX28DRAFT_0071 0.18 -1.8
12,821 + EX28DRAFT_0071 0.18 -2.8
12,822 - EX28DRAFT_0071 0.18 -0.0
12,992 - EX28DRAFT_0071 0.29 +0.3
13,017 + EX28DRAFT_0071 0.30 -0.2
13,018 - EX28DRAFT_0071 0.30 -0.8
13,038 + EX28DRAFT_0071 0.31 -0.8
13,039 - EX28DRAFT_0071 0.31 -0.5
13,039 - EX28DRAFT_0071 0.31 -1.5
13,050 - EX28DRAFT_0071 0.32 -1.3
13,057 + EX28DRAFT_0071 0.33 -0.3
13,058 - EX28DRAFT_0071 0.33 -1.0
13,093 + EX28DRAFT_0071 0.35 -1.7
13,093 + EX28DRAFT_0071 0.35 -0.8
13,093 + EX28DRAFT_0071 0.35 -0.9
13,095 + EX28DRAFT_0071 0.35 -2.0
13,096 - EX28DRAFT_0071 0.35 -2.2
13,096 - EX28DRAFT_0071 0.35 -1.1
13,096 - EX28DRAFT_0071 0.35 -2.2
13,133 + EX28DRAFT_0071 0.37 -1.5
13,221 + EX28DRAFT_0071 0.43 -1.6
13,222 - EX28DRAFT_0071 0.43 -3.0
13,512 + EX28DRAFT_0071 0.61 -1.1
13,513 - EX28DRAFT_0071 0.61 -2.4
13,519 - EX28DRAFT_0071 0.61 -0.9
13,585 + EX28DRAFT_0071 0.65 -0.9
13,652 - EX28DRAFT_0071 0.69 -1.9
13,693 + EX28DRAFT_0071 0.72 -0.6
13,693 + EX28DRAFT_0071 0.72 -1.6
13,804 - EX28DRAFT_0071 0.79 +1.6
13,943 - EX28DRAFT_0071 0.87 -1.8
14,007 + -1.4
14,015 - -0.8
14,117 + -1.2
14,206 + -1.3
14,206 + -1.7
14,206 + +0.3
14,206 + -1.1
14,207 - +0.3
14,207 - -0.1
14,207 - -0.0
14,207 - +1.1
14,272 - -0.4
14,328 + +0.9
14,329 - -3.0
14,406 + -0.2
14,406 + +0.7
14,406 + +0.0
14,406 + -0.2
14,407 - -0.3
15,120 + -0.0

Or see this region's nucleotide sequence