Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29140 and ABIE40_RS29145 are separated by 591 nucleotides ABIE40_RS29145 and ABIE40_RS29150 overlap by 1 nucleotides ABIE40_RS29150 and ABIE40_RS29155 are separated by 512 nucleotides
ABIE40_RS29140: ABIE40_RS29140 - alpha-glucosidase, at 531,562 to 533,220
_RS29140
ABIE40_RS29145: ABIE40_RS29145 - hypothetical protein, at 533,812 to 534,156
_RS29145
ABIE40_RS29150: ABIE40_RS29150 - IS5 family transposase, at 534,156 to 535,235
_RS29150
ABIE40_RS29155: ABIE40_RS29155 - transport-associated protein, at 535,748 to 535,986
_RS29155
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 533.159 kb on + strand at 533.343 kb on - strand at 533.352 kb on + strand at 533.353 kb on - strand at 533.463 kb on + strand at 533.464 kb on - strand at 533.464 kb on - strand at 533.531 kb on - strand at 533.531 kb on - strand at 533.531 kb on - strand at 533.531 kb on - strand at 533.659 kb on + strand at 533.660 kb on - strand at 533.660 kb on - strand at 533.660 kb on - strand at 533.661 kb on + strand at 533.661 kb on + strand at 533.662 kb on - strand at 533.662 kb on - strand at 533.705 kb on - strand at 533.705 kb on - strand at 533.709 kb on + strand at 533.785 kb on + strand at 533.785 kb on + strand at 533.785 kb on + strand at 533.786 kb on - strand at 533.786 kb on - strand at 533.794 kb on - strand at 533.794 kb on - strand at 533.857 kb on - strand, within ABIE40_RS29145 at 533.858 kb on + strand, within ABIE40_RS29145 at 533.858 kb on + strand, within ABIE40_RS29145 at 533.858 kb on + strand, within ABIE40_RS29145 at 533.858 kb on + strand, within ABIE40_RS29145 at 533.858 kb on + strand, within ABIE40_RS29145 at 533.858 kb on + strand, within ABIE40_RS29145 at 533.858 kb on + strand, within ABIE40_RS29145 at 533.858 kb on + strand, within ABIE40_RS29145 at 533.858 kb on + strand, within ABIE40_RS29145 at 533.859 kb on - strand, within ABIE40_RS29145 at 533.859 kb on - strand, within ABIE40_RS29145 at 533.859 kb on - strand, within ABIE40_RS29145 at 533.859 kb on - strand, within ABIE40_RS29145 at 533.859 kb on - strand, within ABIE40_RS29145 at 533.859 kb on - strand, within ABIE40_RS29145 at 533.859 kb on - strand, within ABIE40_RS29145 at 533.859 kb on - strand, within ABIE40_RS29145 at 533.859 kb on - strand, within ABIE40_RS29145 at 533.862 kb on + strand, within ABIE40_RS29145 at 533.862 kb on + strand, within ABIE40_RS29145 at 533.862 kb on + strand, within ABIE40_RS29145 at 534.003 kb on + strand, within ABIE40_RS29145 at 534.049 kb on + strand, within ABIE40_RS29145 at 534.049 kb on + strand, within ABIE40_RS29145 at 534.049 kb on + strand, within ABIE40_RS29145 at 534.050 kb on - strand, within ABIE40_RS29145 at 534.050 kb on - strand, within ABIE40_RS29145 at 534.200 kb on - strand at 534.306 kb on - strand, within ABIE40_RS29150 at 534.321 kb on + strand, within ABIE40_RS29150 at 534.321 kb on + strand, within ABIE40_RS29150 at 534.322 kb on - strand, within ABIE40_RS29150 at 534.322 kb on - strand, within ABIE40_RS29150 at 534.332 kb on + strand, within ABIE40_RS29150 at 534.332 kb on + strand, within ABIE40_RS29150 at 534.334 kb on + strand, within ABIE40_RS29150 at 534.335 kb on - strand, within ABIE40_RS29150 at 534.335 kb on - strand, within ABIE40_RS29150 at 534.335 kb on - strand, within ABIE40_RS29150 at 534.335 kb on - strand, within ABIE40_RS29150 at 534.451 kb on + strand, within ABIE40_RS29150 at 534.451 kb on + strand, within ABIE40_RS29150 at 534.452 kb on - strand, within ABIE40_RS29150 at 534.556 kb on + strand, within ABIE40_RS29150 at 534.556 kb on + strand, within ABIE40_RS29150 at 534.556 kb on + strand, within ABIE40_RS29150 at 534.557 kb on - strand, within ABIE40_RS29150 at 534.557 kb on - strand, within ABIE40_RS29150 at 534.643 kb on + strand, within ABIE40_RS29150 at 534.643 kb on + strand, within ABIE40_RS29150 at 534.644 kb on - strand, within ABIE40_RS29150 at 534.644 kb on - strand, within ABIE40_RS29150 at 534.644 kb on - strand, within ABIE40_RS29150 at 534.644 kb on - strand, within ABIE40_RS29150 at 534.835 kb on - strand, within ABIE40_RS29150 at 534.855 kb on + strand, within ABIE40_RS29150 at 534.980 kb on - strand, within ABIE40_RS29150 at 535.195 kb on + strand at 535.195 kb on + strand at 535.196 kb on - strand at 535.196 kb on - strand at 535.283 kb on + strand at 535.283 kb on + strand at 535.283 kb on + strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.284 kb on - strand at 535.313 kb on + strand at 535.327 kb on + strand at 535.328 kb on - strand at 535.522 kb on + strand at 535.522 kb on + strand at 535.522 kb on + strand at 535.523 kb on - strand at 535.523 kb on - strand at 535.523 kb on - strand at 535.544 kb on - strand at 535.632 kb on + strand at 535.632 kb on + strand at 535.632 kb on + strand at 535.632 kb on + strand at 535.632 kb on + strand at 535.633 kb on - strand at 535.633 kb on - strand at 535.633 kb on - strand at 535.697 kb on - strand at 535.706 kb on - strand at 535.730 kb on + strand at 535.730 kb on + strand at 535.731 kb on - strand at 535.825 kb on + strand, within ABIE40_RS29155 at 535.882 kb on + strand, within ABIE40_RS29155 at 535.984 kb on + strand at 535.984 kb on + strand at 535.984 kb on + strand at 535.984 kb on + strand at 535.985 kb on - strand at 535.988 kb on - strand at 535.988 kb on - strand at 536.142 kb on - strand at 536.142 kb on - strand at 536.152 kb on + strand at 536.152 kb on + strand at 536.152 kb on + strand at 536.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 533,159 + +1.5 533,343 - -0.1 533,352 + +1.9 533,353 - +0.4 533,463 + +0.6 533,464 - +0.5 533,464 - +1.3 533,531 - -1.0 533,531 - +0.8 533,531 - -1.1 533,531 - -0.6 533,659 + +0.2 533,660 - -0.8 533,660 - +0.5 533,660 - -0.3 533,661 + -2.8 533,661 + +0.1 533,662 - -1.5 533,662 - +0.3 533,705 - +0.7 533,705 - -1.0 533,709 + -0.4 533,785 + +0.2 533,785 + +0.2 533,785 + -0.4 533,786 - -0.8 533,786 - -0.6 533,794 - -1.2 533,794 - -0.7 533,857 - ABIE40_RS29145 0.13 -0.2 533,858 + ABIE40_RS29145 0.13 -1.1 533,858 + ABIE40_RS29145 0.13 -1.3 533,858 + ABIE40_RS29145 0.13 +0.4 533,858 + ABIE40_RS29145 0.13 +0.9 533,858 + ABIE40_RS29145 0.13 -0.0 533,858 + ABIE40_RS29145 0.13 +0.3 533,858 + ABIE40_RS29145 0.13 +0.1 533,858 + ABIE40_RS29145 0.13 -1.2 533,858 + ABIE40_RS29145 0.13 -1.0 533,859 - ABIE40_RS29145 0.14 -0.1 533,859 - ABIE40_RS29145 0.14 +2.4 533,859 - ABIE40_RS29145 0.14 +0.3 533,859 - ABIE40_RS29145 0.14 -0.1 533,859 - ABIE40_RS29145 0.14 +0.1 533,859 - ABIE40_RS29145 0.14 +0.3 533,859 - ABIE40_RS29145 0.14 -0.9 533,859 - ABIE40_RS29145 0.14 +1.5 533,859 - ABIE40_RS29145 0.14 -0.7 533,862 + ABIE40_RS29145 0.14 -1.3 533,862 + ABIE40_RS29145 0.14 -0.1 533,862 + ABIE40_RS29145 0.14 +1.3 534,003 + ABIE40_RS29145 0.55 +0.8 534,049 + ABIE40_RS29145 0.69 -0.6 534,049 + ABIE40_RS29145 0.69 -0.6 534,049 + ABIE40_RS29145 0.69 +0.8 534,050 - ABIE40_RS29145 0.69 -0.2 534,050 - ABIE40_RS29145 0.69 +1.0 534,200 - -0.3 534,306 - ABIE40_RS29150 0.14 -0.1 534,321 + ABIE40_RS29150 0.15 +2.6 534,321 + ABIE40_RS29150 0.15 +1.2 534,322 - ABIE40_RS29150 0.15 +1.1 534,322 - ABIE40_RS29150 0.15 -1.3 534,332 + ABIE40_RS29150 0.16 -0.5 534,332 + ABIE40_RS29150 0.16 -0.2 534,334 + ABIE40_RS29150 0.16 +0.1 534,335 - ABIE40_RS29150 0.17 -0.3 534,335 - ABIE40_RS29150 0.17 +0.1 534,335 - ABIE40_RS29150 0.17 +0.6 534,335 - ABIE40_RS29150 0.17 -0.5 534,451 + ABIE40_RS29150 0.27 -0.1 534,451 + ABIE40_RS29150 0.27 -0.1 534,452 - ABIE40_RS29150 0.27 -1.6 534,556 + ABIE40_RS29150 0.37 -0.7 534,556 + ABIE40_RS29150 0.37 -0.3 534,556 + ABIE40_RS29150 0.37 +0.5 534,557 - ABIE40_RS29150 0.37 -0.0 534,557 - ABIE40_RS29150 0.37 +0.1 534,643 + ABIE40_RS29150 0.45 -0.5 534,643 + ABIE40_RS29150 0.45 +0.4 534,644 - ABIE40_RS29150 0.45 +0.4 534,644 - ABIE40_RS29150 0.45 +1.2 534,644 - ABIE40_RS29150 0.45 -0.4 534,644 - ABIE40_RS29150 0.45 -0.7 534,835 - ABIE40_RS29150 0.63 -0.7 534,855 + ABIE40_RS29150 0.65 +0.3 534,980 - ABIE40_RS29150 0.76 +2.2 535,195 + -0.1 535,195 + -0.1 535,196 - -0.5 535,196 - +0.4 535,283 + +0.5 535,283 + -0.6 535,283 + -1.8 535,284 - +1.5 535,284 - -0.6 535,284 - +0.6 535,284 - +0.2 535,284 - -3.3 535,284 - +0.6 535,284 - +1.5 535,284 - -0.0 535,284 - -0.1 535,284 - -1.7 535,284 - +1.8 535,284 - -1.4 535,284 - +0.5 535,313 + -0.7 535,327 + -0.9 535,328 - +0.3 535,522 + +0.1 535,522 + +0.2 535,522 + +0.0 535,523 - -0.2 535,523 - +0.6 535,523 - -1.2 535,544 - +1.6 535,632 + +0.6 535,632 + +0.0 535,632 + -0.6 535,632 + -1.7 535,632 + -1.2 535,633 - -0.7 535,633 - -1.6 535,633 - -1.3 535,697 - +2.0 535,706 - -0.1 535,730 + +0.3 535,730 + +0.1 535,731 - -0.4 535,825 + ABIE40_RS29155 0.32 -1.1 535,882 + ABIE40_RS29155 0.56 -2.4 535,984 + +0.3 535,984 + -0.7 535,984 + +0.9 535,984 + -0.7 535,985 - -0.1 535,988 - +0.7 535,988 - +0.3 536,142 - +3.1 536,142 - -0.1 536,152 + -1.4 536,152 + +1.5 536,152 + -1.0 536,175 - -0.1
Or see this region's nucleotide sequence