Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS27795

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS27790 and ABIE40_RS27795 are separated by 53 nucleotidesABIE40_RS27795 and ABIE40_RS27800 overlap by 4 nucleotides ABIE40_RS27790: ABIE40_RS27790 - extracellular solute-binding protein, at 269,257 to 270,576 _RS27790 ABIE40_RS27795: ABIE40_RS27795 - sugar ABC transporter permease, at 270,630 to 271,502 _RS27795 ABIE40_RS27800: ABIE40_RS27800 - carbohydrate ABC transporter permease, at 271,499 to 272,320 _RS27800 Position (kb) 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 269.636 kb on - strand, within ABIE40_RS27790at 269.636 kb on - strand, within ABIE40_RS27790at 269.672 kb on - strand, within ABIE40_RS27790at 269.672 kb on - strand, within ABIE40_RS27790at 269.674 kb on + strand, within ABIE40_RS27790at 269.675 kb on - strand, within ABIE40_RS27790at 269.728 kb on + strand, within ABIE40_RS27790at 269.728 kb on + strand, within ABIE40_RS27790at 269.729 kb on - strand, within ABIE40_RS27790at 269.729 kb on - strand, within ABIE40_RS27790at 269.729 kb on - strand, within ABIE40_RS27790at 269.821 kb on + strand, within ABIE40_RS27790at 269.821 kb on + strand, within ABIE40_RS27790at 269.821 kb on + strand, within ABIE40_RS27790at 269.822 kb on - strand, within ABIE40_RS27790at 269.822 kb on - strand, within ABIE40_RS27790at 269.822 kb on - strand, within ABIE40_RS27790at 269.860 kb on + strand, within ABIE40_RS27790at 269.983 kb on + strand, within ABIE40_RS27790at 269.984 kb on - strand, within ABIE40_RS27790at 270.004 kb on + strand, within ABIE40_RS27790at 270.004 kb on + strand, within ABIE40_RS27790at 270.004 kb on + strand, within ABIE40_RS27790at 270.004 kb on + strand, within ABIE40_RS27790at 270.004 kb on + strand, within ABIE40_RS27790at 270.005 kb on - strand, within ABIE40_RS27790at 270.005 kb on - strand, within ABIE40_RS27790at 270.005 kb on - strand, within ABIE40_RS27790at 270.006 kb on + strand, within ABIE40_RS27790at 270.007 kb on - strand, within ABIE40_RS27790at 270.007 kb on - strand, within ABIE40_RS27790at 270.007 kb on - strand, within ABIE40_RS27790at 270.016 kb on + strand, within ABIE40_RS27790at 270.052 kb on + strand, within ABIE40_RS27790at 270.053 kb on - strand, within ABIE40_RS27790at 270.053 kb on - strand, within ABIE40_RS27790at 270.053 kb on - strand, within ABIE40_RS27790at 270.319 kb on + strand, within ABIE40_RS27790at 270.320 kb on - strand, within ABIE40_RS27790at 270.320 kb on - strand, within ABIE40_RS27790at 270.320 kb on - strand, within ABIE40_RS27790at 270.421 kb on + strand, within ABIE40_RS27790at 270.421 kb on + strand, within ABIE40_RS27790at 270.421 kb on + strand, within ABIE40_RS27790at 270.422 kb on - strand, within ABIE40_RS27790at 270.422 kb on - strand, within ABIE40_RS27790at 270.422 kb on - strand, within ABIE40_RS27790at 270.422 kb on - strand, within ABIE40_RS27790at 270.422 kb on - strand, within ABIE40_RS27790at 270.428 kb on - strand, within ABIE40_RS27790at 270.428 kb on - strand, within ABIE40_RS27790at 270.635 kb on + strandat 270.636 kb on - strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.637 kb on + strandat 270.638 kb on - strandat 270.638 kb on - strandat 270.638 kb on - strandat 270.640 kb on + strandat 270.640 kb on + strandat 270.640 kb on + strandat 270.640 kb on + strandat 270.641 kb on - strandat 270.663 kb on + strandat 270.664 kb on - strandat 270.792 kb on + strand, within ABIE40_RS27795at 270.792 kb on + strand, within ABIE40_RS27795at 270.793 kb on - strand, within ABIE40_RS27795at 270.793 kb on - strand, within ABIE40_RS27795at 270.994 kb on - strand, within ABIE40_RS27795at 271.032 kb on + strand, within ABIE40_RS27795at 271.033 kb on - strand, within ABIE40_RS27795at 271.033 kb on - strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.035 kb on + strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.036 kb on - strand, within ABIE40_RS27795at 271.090 kb on + strand, within ABIE40_RS27795at 271.149 kb on + strand, within ABIE40_RS27795at 271.149 kb on + strand, within ABIE40_RS27795at 271.150 kb on - strand, within ABIE40_RS27795at 271.150 kb on - strand, within ABIE40_RS27795at 271.317 kb on + strand, within ABIE40_RS27795at 271.317 kb on + strand, within ABIE40_RS27795at 271.318 kb on - strand, within ABIE40_RS27795at 271.318 kb on - strand, within ABIE40_RS27795at 271.318 kb on - strand, within ABIE40_RS27795at 271.318 kb on - strand, within ABIE40_RS27795at 271.368 kb on + strand, within ABIE40_RS27795at 271.368 kb on + strand, within ABIE40_RS27795at 271.368 kb on + strand, within ABIE40_RS27795at 271.368 kb on + strand, within ABIE40_RS27795at 271.369 kb on - strand, within ABIE40_RS27795at 271.369 kb on - strand, within ABIE40_RS27795at 271.369 kb on - strand, within ABIE40_RS27795at 271.369 kb on - strand, within ABIE40_RS27795at 271.374 kb on + strand, within ABIE40_RS27795at 271.375 kb on - strand, within ABIE40_RS27795at 271.375 kb on - strand, within ABIE40_RS27795at 271.458 kb on + strandat 271.650 kb on - strand, within ABIE40_RS27800at 271.684 kb on + strand, within ABIE40_RS27800at 271.688 kb on + strand, within ABIE40_RS27800at 271.688 kb on + strand, within ABIE40_RS27800at 271.688 kb on + strand, within ABIE40_RS27800at 271.688 kb on + strand, within ABIE40_RS27800at 271.689 kb on - strand, within ABIE40_RS27800at 271.689 kb on - strand, within ABIE40_RS27800at 271.689 kb on - strand, within ABIE40_RS27800at 271.694 kb on + strand, within ABIE40_RS27800at 271.694 kb on + strand, within ABIE40_RS27800at 271.695 kb on - strand, within ABIE40_RS27800at 271.695 kb on - strand, within ABIE40_RS27800at 271.695 kb on - strand, within ABIE40_RS27800at 271.766 kb on + strand, within ABIE40_RS27800at 271.767 kb on - strand, within ABIE40_RS27800at 271.862 kb on + strand, within ABIE40_RS27800at 271.862 kb on + strand, within ABIE40_RS27800at 271.862 kb on + strand, within ABIE40_RS27800at 271.863 kb on - strand, within ABIE40_RS27800at 271.863 kb on - strand, within ABIE40_RS27800at 271.863 kb on - strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.872 kb on - strand, within ABIE40_RS27800at 271.872 kb on - strand, within ABIE40_RS27800at 271.872 kb on - strand, within ABIE40_RS27800at 272.202 kb on + strand, within ABIE40_RS27800at 272.202 kb on + strand, within ABIE40_RS27800at 272.203 kb on - strand, within ABIE40_RS27800at 272.203 kb on - strand, within ABIE40_RS27800at 272.203 kb on - strand, within ABIE40_RS27800at 272.273 kb on + strandat 272.273 kb on + strandat 272.273 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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269,636 - ABIE40_RS27790 0.29 -0.9
269,636 - ABIE40_RS27790 0.29 -2.4
269,672 - ABIE40_RS27790 0.31 +0.1
269,672 - ABIE40_RS27790 0.31 -2.8
269,674 + ABIE40_RS27790 0.32 +0.3
269,675 - ABIE40_RS27790 0.32 -0.6
269,728 + ABIE40_RS27790 0.36 -0.9
269,728 + ABIE40_RS27790 0.36 +2.9
269,729 - ABIE40_RS27790 0.36 -1.4
269,729 - ABIE40_RS27790 0.36 +0.6
269,729 - ABIE40_RS27790 0.36 +0.1
269,821 + ABIE40_RS27790 0.43 +0.1
269,821 + ABIE40_RS27790 0.43 -0.2
269,821 + ABIE40_RS27790 0.43 +0.0
269,822 - ABIE40_RS27790 0.43 +1.1
269,822 - ABIE40_RS27790 0.43 -1.5
269,822 - ABIE40_RS27790 0.43 +0.9
269,860 + ABIE40_RS27790 0.46 +1.9
269,983 + ABIE40_RS27790 0.55 -1.1
269,984 - ABIE40_RS27790 0.55 +0.9
270,004 + ABIE40_RS27790 0.57 -0.2
270,004 + ABIE40_RS27790 0.57 +1.5
270,004 + ABIE40_RS27790 0.57 -0.1
270,004 + ABIE40_RS27790 0.57 +0.1
270,004 + ABIE40_RS27790 0.57 +0.4
270,005 - ABIE40_RS27790 0.57 -0.3
270,005 - ABIE40_RS27790 0.57 +0.2
270,005 - ABIE40_RS27790 0.57 -0.4
270,006 + ABIE40_RS27790 0.57 -2.4
270,007 - ABIE40_RS27790 0.57 +0.6
270,007 - ABIE40_RS27790 0.57 +2.3
270,007 - ABIE40_RS27790 0.57 +0.7
270,016 + ABIE40_RS27790 0.57 +1.9
270,052 + ABIE40_RS27790 0.60 -1.0
270,053 - ABIE40_RS27790 0.60 -0.6
270,053 - ABIE40_RS27790 0.60 +1.7
270,053 - ABIE40_RS27790 0.60 -0.4
270,319 + ABIE40_RS27790 0.80 +0.3
270,320 - ABIE40_RS27790 0.81 +0.5
270,320 - ABIE40_RS27790 0.81 +0.8
270,320 - ABIE40_RS27790 0.81 +1.3
270,421 + ABIE40_RS27790 0.88 +0.7
270,421 + ABIE40_RS27790 0.88 +2.7
270,421 + ABIE40_RS27790 0.88 -2.7
270,422 - ABIE40_RS27790 0.88 -0.0
270,422 - ABIE40_RS27790 0.88 -0.7
270,422 - ABIE40_RS27790 0.88 +0.4
270,422 - ABIE40_RS27790 0.88 -1.0
270,422 - ABIE40_RS27790 0.88 +0.6
270,428 - ABIE40_RS27790 0.89 +0.5
270,428 - ABIE40_RS27790 0.89 +0.8
270,635 + -0.1
270,636 - -2.1
270,637 + -1.0
270,637 + -1.7
270,637 + +0.0
270,637 + +0.4
270,637 + -2.3
270,637 + +1.4
270,637 + +0.6
270,638 - -1.8
270,638 - -0.1
270,638 - -0.0
270,640 + +1.2
270,640 + -0.1
270,640 + +0.8
270,640 + +0.3
270,641 - -0.3
270,663 + -0.8
270,664 - +0.4
270,792 + ABIE40_RS27795 0.19 -1.7
270,792 + ABIE40_RS27795 0.19 -0.1
270,793 - ABIE40_RS27795 0.19 -0.6
270,793 - ABIE40_RS27795 0.19 +0.1
270,994 - ABIE40_RS27795 0.42 -0.7
271,032 + ABIE40_RS27795 0.46 +0.1
271,033 - ABIE40_RS27795 0.46 +0.9
271,033 - ABIE40_RS27795 0.46 -1.5
271,035 + ABIE40_RS27795 0.46 +0.2
271,035 + ABIE40_RS27795 0.46 -1.0
271,035 + ABIE40_RS27795 0.46 +0.5
271,035 + ABIE40_RS27795 0.46 -0.5
271,035 + ABIE40_RS27795 0.46 +1.4
271,035 + ABIE40_RS27795 0.46 -0.5
271,036 - ABIE40_RS27795 0.47 +0.8
271,036 - ABIE40_RS27795 0.47 +1.8
271,036 - ABIE40_RS27795 0.47 -2.7
271,036 - ABIE40_RS27795 0.47 +0.3
271,036 - ABIE40_RS27795 0.47 +0.9
271,090 + ABIE40_RS27795 0.53 -1.8
271,149 + ABIE40_RS27795 0.59 -0.7
271,149 + ABIE40_RS27795 0.59 -2.0
271,150 - ABIE40_RS27795 0.60 +1.9
271,150 - ABIE40_RS27795 0.60 -1.6
271,317 + ABIE40_RS27795 0.79 -0.7
271,317 + ABIE40_RS27795 0.79 -1.2
271,318 - ABIE40_RS27795 0.79 -1.2
271,318 - ABIE40_RS27795 0.79 -1.0
271,318 - ABIE40_RS27795 0.79 +0.4
271,318 - ABIE40_RS27795 0.79 -0.8
271,368 + ABIE40_RS27795 0.85 +0.3
271,368 + ABIE40_RS27795 0.85 +0.8
271,368 + ABIE40_RS27795 0.85 +0.9
271,368 + ABIE40_RS27795 0.85 +0.2
271,369 - ABIE40_RS27795 0.85 -0.7
271,369 - ABIE40_RS27795 0.85 +0.1
271,369 - ABIE40_RS27795 0.85 -1.1
271,369 - ABIE40_RS27795 0.85 +0.1
271,374 + ABIE40_RS27795 0.85 -0.9
271,375 - ABIE40_RS27795 0.85 -1.9
271,375 - ABIE40_RS27795 0.85 -0.5
271,458 + +0.5
271,650 - ABIE40_RS27800 0.18 -1.5
271,684 + ABIE40_RS27800 0.23 +0.2
271,688 + ABIE40_RS27800 0.23 -0.1
271,688 + ABIE40_RS27800 0.23 +1.6
271,688 + ABIE40_RS27800 0.23 -0.8
271,688 + ABIE40_RS27800 0.23 -0.6
271,689 - ABIE40_RS27800 0.23 +0.4
271,689 - ABIE40_RS27800 0.23 -0.2
271,689 - ABIE40_RS27800 0.23 +0.4
271,694 + ABIE40_RS27800 0.24 -2.5
271,694 + ABIE40_RS27800 0.24 -0.6
271,695 - ABIE40_RS27800 0.24 +2.9
271,695 - ABIE40_RS27800 0.24 +1.1
271,695 - ABIE40_RS27800 0.24 -0.0
271,766 + ABIE40_RS27800 0.32 -0.9
271,767 - ABIE40_RS27800 0.33 -1.5
271,862 + ABIE40_RS27800 0.44 +0.2
271,862 + ABIE40_RS27800 0.44 +0.6
271,862 + ABIE40_RS27800 0.44 +0.7
271,863 - ABIE40_RS27800 0.44 -2.1
271,863 - ABIE40_RS27800 0.44 +0.1
271,863 - ABIE40_RS27800 0.44 +0.4
271,871 + ABIE40_RS27800 0.45 +0.4
271,871 + ABIE40_RS27800 0.45 +1.1
271,871 + ABIE40_RS27800 0.45 +0.6
271,871 + ABIE40_RS27800 0.45 +0.5
271,872 - ABIE40_RS27800 0.45 -0.1
271,872 - ABIE40_RS27800 0.45 -2.5
271,872 - ABIE40_RS27800 0.45 +0.6
272,202 + ABIE40_RS27800 0.86 +1.1
272,202 + ABIE40_RS27800 0.86 -0.3
272,203 - ABIE40_RS27800 0.86 +2.7
272,203 - ABIE40_RS27800 0.86 +0.2
272,203 - ABIE40_RS27800 0.86 -0.5
272,273 + +0.9
272,273 + +0.0
272,273 + +2.1

Or see this region's nucleotide sequence