Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS26660

Experiment: Gelatin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS26655 and ABIE40_RS26660 are separated by 204 nucleotidesABIE40_RS26660 and ABIE40_RS26665 are separated by 295 nucleotides ABIE40_RS26655: ABIE40_RS26655 - hypothetical protein, at 50,704 to 51,405 _RS26655 ABIE40_RS26660: ABIE40_RS26660 - thiamine pyrophosphate-requiring protein, at 51,610 to 53,400 _RS26660 ABIE40_RS26665: ABIE40_RS26665 - NAD(P)H-dependent oxidoreductase, at 53,696 to 54,313 _RS26665 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 50.728 kb on - strandat 50.851 kb on + strand, within ABIE40_RS26655at 51.070 kb on + strand, within ABIE40_RS26655at 51.070 kb on + strand, within ABIE40_RS26655at 51.070 kb on + strand, within ABIE40_RS26655at 51.071 kb on - strand, within ABIE40_RS26655at 51.090 kb on - strand, within ABIE40_RS26655at 51.149 kb on + strand, within ABIE40_RS26655at 51.149 kb on + strand, within ABIE40_RS26655at 51.150 kb on - strand, within ABIE40_RS26655at 51.150 kb on - strand, within ABIE40_RS26655at 51.150 kb on - strand, within ABIE40_RS26655at 51.150 kb on - strand, within ABIE40_RS26655at 51.150 kb on - strand, within ABIE40_RS26655at 51.395 kb on - strandat 51.419 kb on + strandat 51.419 kb on + strandat 51.422 kb on + strandat 51.422 kb on + strandat 51.423 kb on - strandat 51.423 kb on - strandat 51.430 kb on - strandat 51.736 kb on + strandat 51.737 kb on - strandat 51.737 kb on - strandat 51.737 kb on - strandat 51.851 kb on + strand, within ABIE40_RS26660at 51.851 kb on + strand, within ABIE40_RS26660at 51.851 kb on + strand, within ABIE40_RS26660at 51.852 kb on - strand, within ABIE40_RS26660at 51.852 kb on - strand, within ABIE40_RS26660at 51.852 kb on - strand, within ABIE40_RS26660at 51.891 kb on - strand, within ABIE40_RS26660at 51.927 kb on + strand, within ABIE40_RS26660at 51.927 kb on + strand, within ABIE40_RS26660at 52.375 kb on - strand, within ABIE40_RS26660at 52.414 kb on + strand, within ABIE40_RS26660at 52.414 kb on + strand, within ABIE40_RS26660at 52.415 kb on - strand, within ABIE40_RS26660at 52.415 kb on - strand, within ABIE40_RS26660at 52.498 kb on - strand, within ABIE40_RS26660at 52.507 kb on + strand, within ABIE40_RS26660at 52.691 kb on - strand, within ABIE40_RS26660at 52.825 kb on + strand, within ABIE40_RS26660at 52.923 kb on + strand, within ABIE40_RS26660at 52.924 kb on - strand, within ABIE40_RS26660at 52.924 kb on - strand, within ABIE40_RS26660at 52.998 kb on + strand, within ABIE40_RS26660at 52.999 kb on - strand, within ABIE40_RS26660at 53.066 kb on + strand, within ABIE40_RS26660at 53.141 kb on + strand, within ABIE40_RS26660at 53.142 kb on - strand, within ABIE40_RS26660at 53.143 kb on + strand, within ABIE40_RS26660at 53.144 kb on - strand, within ABIE40_RS26660at 53.144 kb on - strand, within ABIE40_RS26660at 53.144 kb on - strand, within ABIE40_RS26660at 53.144 kb on - strand, within ABIE40_RS26660at 53.144 kb on - strand, within ABIE40_RS26660at 53.144 kb on - strand, within ABIE40_RS26660at 53.144 kb on - strand, within ABIE40_RS26660at 53.187 kb on + strand, within ABIE40_RS26660at 53.188 kb on - strand, within ABIE40_RS26660at 53.331 kb on - strandat 53.419 kb on + strandat 53.419 kb on + strandat 53.419 kb on + strandat 53.420 kb on - strandat 53.420 kb on - strandat 53.507 kb on - strandat 53.554 kb on - strandat 53.554 kb on - strandat 53.554 kb on - strandat 53.556 kb on + strandat 53.556 kb on + strandat 53.556 kb on + strandat 53.557 kb on - strandat 53.560 kb on - strandat 53.631 kb on + strandat 53.631 kb on + strandat 53.632 kb on - strandat 53.632 kb on - strandat 53.632 kb on - strandat 53.695 kb on + strandat 53.695 kb on + strandat 53.695 kb on + strandat 53.695 kb on + strandat 53.704 kb on + strandat 53.704 kb on + strandat 53.730 kb on + strandat 53.824 kb on - strand, within ABIE40_RS26665at 53.859 kb on + strand, within ABIE40_RS26665at 53.859 kb on + strand, within ABIE40_RS26665at 53.924 kb on - strand, within ABIE40_RS26665at 53.929 kb on + strand, within ABIE40_RS26665at 53.930 kb on - strand, within ABIE40_RS26665at 53.930 kb on - strand, within ABIE40_RS26665at 53.930 kb on - strand, within ABIE40_RS26665at 53.930 kb on - strand, within ABIE40_RS26665at 53.975 kb on - strand, within ABIE40_RS26665at 54.137 kb on - strand, within ABIE40_RS26665at 54.162 kb on - strand, within ABIE40_RS26665at 54.190 kb on + strand, within ABIE40_RS26665at 54.191 kb on - strand, within ABIE40_RS26665at 54.256 kb on + strandat 54.257 kb on - strandat 54.332 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
remove
50,728 - -0.2
50,851 + ABIE40_RS26655 0.21 -1.2
51,070 + ABIE40_RS26655 0.52 +1.1
51,070 + ABIE40_RS26655 0.52 -1.2
51,070 + ABIE40_RS26655 0.52 -0.6
51,071 - ABIE40_RS26655 0.52 -2.3
51,090 - ABIE40_RS26655 0.55 +0.5
51,149 + ABIE40_RS26655 0.63 -0.5
51,149 + ABIE40_RS26655 0.63 +1.6
51,150 - ABIE40_RS26655 0.64 -0.4
51,150 - ABIE40_RS26655 0.64 +0.7
51,150 - ABIE40_RS26655 0.64 -0.3
51,150 - ABIE40_RS26655 0.64 -1.4
51,150 - ABIE40_RS26655 0.64 -1.1
51,395 - +0.7
51,419 + +0.7
51,419 + +0.8
51,422 + +0.2
51,422 + -0.4
51,423 - -0.6
51,423 - -0.5
51,430 - +1.0
51,736 + -0.2
51,737 - -0.8
51,737 - -0.2
51,737 - -0.2
51,851 + ABIE40_RS26660 0.13 +0.1
51,851 + ABIE40_RS26660 0.13 -1.7
51,851 + ABIE40_RS26660 0.13 -0.8
51,852 - ABIE40_RS26660 0.14 -2.6
51,852 - ABIE40_RS26660 0.14 -0.1
51,852 - ABIE40_RS26660 0.14 -1.6
51,891 - ABIE40_RS26660 0.16 -0.1
51,927 + ABIE40_RS26660 0.18 +2.1
51,927 + ABIE40_RS26660 0.18 -0.2
52,375 - ABIE40_RS26660 0.43 -0.3
52,414 + ABIE40_RS26660 0.45 -1.0
52,414 + ABIE40_RS26660 0.45 -0.1
52,415 - ABIE40_RS26660 0.45 +1.8
52,415 - ABIE40_RS26660 0.45 -3.2
52,498 - ABIE40_RS26660 0.50 +0.2
52,507 + ABIE40_RS26660 0.50 +1.2
52,691 - ABIE40_RS26660 0.60 -1.2
52,825 + ABIE40_RS26660 0.68 -1.3
52,923 + ABIE40_RS26660 0.73 +0.3
52,924 - ABIE40_RS26660 0.73 +0.7
52,924 - ABIE40_RS26660 0.73 -0.4
52,998 + ABIE40_RS26660 0.77 +0.2
52,999 - ABIE40_RS26660 0.78 +0.4
53,066 + ABIE40_RS26660 0.81 +1.6
53,141 + ABIE40_RS26660 0.85 +1.3
53,142 - ABIE40_RS26660 0.86 +0.3
53,143 + ABIE40_RS26660 0.86 -0.2
53,144 - ABIE40_RS26660 0.86 -0.3
53,144 - ABIE40_RS26660 0.86 +1.9
53,144 - ABIE40_RS26660 0.86 -0.3
53,144 - ABIE40_RS26660 0.86 -1.3
53,144 - ABIE40_RS26660 0.86 +0.7
53,144 - ABIE40_RS26660 0.86 +0.4
53,144 - ABIE40_RS26660 0.86 -1.7
53,187 + ABIE40_RS26660 0.88 -2.3
53,188 - ABIE40_RS26660 0.88 -2.4
53,331 - -1.0
53,419 + -1.1
53,419 + -0.9
53,419 + -0.6
53,420 - -1.5
53,420 - -1.6
53,507 - -0.2
53,554 - +1.2
53,554 - +1.4
53,554 - -0.7
53,556 + -0.6
53,556 + -2.5
53,556 + +0.5
53,557 - +0.1
53,560 - -0.4
53,631 + -1.3
53,631 + +1.3
53,632 - -0.1
53,632 - -0.1
53,632 - -1.2
53,695 + -1.4
53,695 + +0.3
53,695 + +0.6
53,695 + -0.7
53,704 + +0.4
53,704 + +0.1
53,730 + +1.1
53,824 - ABIE40_RS26665 0.21 -0.7
53,859 + ABIE40_RS26665 0.26 +1.2
53,859 + ABIE40_RS26665 0.26 -1.9
53,924 - ABIE40_RS26665 0.37 +1.7
53,929 + ABIE40_RS26665 0.38 -1.2
53,930 - ABIE40_RS26665 0.38 -0.7
53,930 - ABIE40_RS26665 0.38 +1.1
53,930 - ABIE40_RS26665 0.38 +0.0
53,930 - ABIE40_RS26665 0.38 -0.1
53,975 - ABIE40_RS26665 0.45 +0.9
54,137 - ABIE40_RS26665 0.71 +2.2
54,162 - ABIE40_RS26665 0.75 +0.1
54,190 + ABIE40_RS26665 0.80 +0.4
54,191 - ABIE40_RS26665 0.80 +1.6
54,256 + -0.4
54,257 - -0.1
54,332 + -1.7

Or see this region's nucleotide sequence