Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS24335

Experiment: Gelatin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gelatin (C)
1,011,923	+		ABIE40_RS24330	0.23	-1.0
1,011,923	+		ABIE40_RS24330	0.23	-0.1
1,011,923	+		ABIE40_RS24330	0.23	-0.2
1,011,924	-		ABIE40_RS24330	0.23	+0.0
1,011,939	+		ABIE40_RS24330	0.24	-0.2
1,011,939	+		ABIE40_RS24330	0.24	-0.3
1,011,939	+		ABIE40_RS24330	0.24	-1.5
1,011,939	+		ABIE40_RS24330	0.24	-2.3
1,011,939	+		ABIE40_RS24330	0.24	+0.9
1,011,939	+		ABIE40_RS24330	0.24	-0.3
1,011,939	+		ABIE40_RS24330	0.24	-1.1
1,011,940	-		ABIE40_RS24330	0.24	-0.9
1,011,940	-		ABIE40_RS24330	0.24	-0.4
1,011,982	-		ABIE40_RS24330	0.28	-0.6
1,012,191	-		ABIE40_RS24330	0.47	+0.1
1,012,359	+		ABIE40_RS24330	0.63	-3.2
1,012,360	-		ABIE40_RS24330	0.63	-0.7
1,012,360	-		ABIE40_RS24330	0.63	-0.2
1,012,537	+		ABIE40_RS24330	0.79	+1.0
1,012,617	+		ABIE40_RS24330	0.86	-1.1
1,012,617	+		ABIE40_RS24330	0.86	-0.5
1,012,711	+				-0.1
1,012,711	+				+0.4
1,012,711	+				+1.2
1,012,712	-				-0.7
1,012,712	-				-2.0
1,012,764	+				+0.7
1,012,764	+				-0.9
1,012,764	+				+0.8
1,012,764	+				-1.8
1,012,801	+				-1.5
1,012,802	-				+0.6
1,012,802	-				+0.2
1,012,802	-				-2.8
1,012,802	-				-0.2
1,012,803	+				-0.2
1,012,803	+				-1.6
1,012,803	+				+0.8
1,012,803	+				+0.2
1,012,803	+				-0.7
1,012,804	-				-0.1
1,012,804	-				-0.9
1,012,804	-				-2.4
1,012,960	+		ABIE40_RS24335	0.15	+0.8
1,012,960	+		ABIE40_RS24335	0.15	-0.8
1,012,961	-		ABIE40_RS24335	0.15	-0.1
1,013,012	-		ABIE40_RS24335	0.19	+0.2
1,013,012	-		ABIE40_RS24335	0.19	-2.5
1,013,152	+		ABIE40_RS24335	0.31	-2.1
1,013,152	+		ABIE40_RS24335	0.31	+0.3
1,013,152	+		ABIE40_RS24335	0.31	+0.4
1,013,152	+		ABIE40_RS24335	0.31	-1.6
1,013,152	+		ABIE40_RS24335	0.31	+0.7
1,013,153	-		ABIE40_RS24335	0.31	-2.2
1,013,153	-		ABIE40_RS24335	0.31	+0.7
1,013,153	-		ABIE40_RS24335	0.31	-0.9
1,013,153	-		ABIE40_RS24335	0.31	-0.9
1,013,153	-		ABIE40_RS24335	0.31	-0.6
1,013,153	-		ABIE40_RS24335	0.31	-0.3
1,013,278	+		ABIE40_RS24335	0.42	-2.8
1,013,278	+		ABIE40_RS24335	0.42	+1.2
1,013,279	-		ABIE40_RS24335	0.42	+0.6
1,013,279	-		ABIE40_RS24335	0.42	-0.8
1,013,279	-		ABIE40_RS24335	0.42	+0.5
1,013,301	+		ABIE40_RS24335	0.44	-1.0
1,013,413	+		ABIE40_RS24335	0.54	+0.2
1,013,414	-		ABIE40_RS24335	0.54	-0.7
1,013,414	-		ABIE40_RS24335	0.54	-0.1
1,013,548	+		ABIE40_RS24335	0.65	-0.3
1,013,641	+		ABIE40_RS24335	0.73	+1.1
1,013,641	+		ABIE40_RS24335	0.73	+0.4
1,013,641	+		ABIE40_RS24335	0.73	-0.8
1,013,641	+		ABIE40_RS24335	0.73	+0.2
1,013,641	+		ABIE40_RS24335	0.73	-0.3
1,013,642	-		ABIE40_RS24335	0.73	+0.1
1,013,642	-		ABIE40_RS24335	0.73	+0.2
1,013,642	-		ABIE40_RS24335	0.73	+1.2
1,013,642	-		ABIE40_RS24335	0.73	+0.5
1,013,677	+		ABIE40_RS24335	0.76	-2.0
1,013,683	+		ABIE40_RS24335	0.77	-0.7
1,013,737	+		ABIE40_RS24335	0.81	+0.1
1,013,738	-		ABIE40_RS24335	0.82	+0.6
1,013,738	-		ABIE40_RS24335	0.82	+2.5
1,013,738	-		ABIE40_RS24335	0.82	-1.7
1,013,738	-		ABIE40_RS24335	0.82	-0.0
1,013,851	+				+1.5
1,013,851	+				+0.4
1,013,950	+				-1.1
1,013,951	-				+0.8
1,013,951	-				-2.7
1,014,014	+				-1.7
1,014,014	+				-0.5
1,014,014	+				-2.2
1,014,014	+				-1.0
1,014,014	+				+0.2
1,014,014	+				+1.2
1,014,014	+				+0.8
1,014,014	+				-0.0
1,014,014	+				+1.7
1,014,014	+				-0.1
1,014,015	-				+0.8
1,014,015	-				-1.1
1,014,015	-				-0.3
1,014,015	-				-0.1
1,014,015	-				-0.7
1,014,269	-		ABIE40_RS24340	0.29	+0.2
1,014,285	+		ABIE40_RS24340	0.31	-0.4
1,014,285	+		ABIE40_RS24340	0.31	-1.3
1,014,285	+		ABIE40_RS24340	0.31	-1.1
1,014,285	+		ABIE40_RS24340	0.31	+1.9
1,014,286	-		ABIE40_RS24340	0.31	+1.5
1,014,286	-		ABIE40_RS24340	0.31	+0.5
1,014,288	+		ABIE40_RS24340	0.31	+1.0
1,014,288	+		ABIE40_RS24340	0.31	+0.6
1,014,289	-		ABIE40_RS24340	0.32	-0.9
1,014,289	-		ABIE40_RS24340	0.32	+1.6
1,014,289	-		ABIE40_RS24340	0.32	-2.0
1,014,378	+		ABIE40_RS24340	0.42	-0.0
1,014,378	+		ABIE40_RS24340	0.42	-0.9
1,014,378	+		ABIE40_RS24340	0.42	+0.2
1,014,378	+		ABIE40_RS24340	0.42	-1.0
1,014,378	+		ABIE40_RS24340	0.42	-0.1
1,014,379	-		ABIE40_RS24340	0.42	+0.9
1,014,379	-		ABIE40_RS24340	0.42	-2.2
1,014,379	-		ABIE40_RS24340	0.42	-0.1
1,014,379	-		ABIE40_RS24340	0.42	-0.2
1,014,379	-		ABIE40_RS24340	0.42	-0.7
1,014,390	+		ABIE40_RS24340	0.43	+0.7
1,014,391	-		ABIE40_RS24340	0.43	-0.6
1,014,391	-		ABIE40_RS24340	0.43	-0.5
1,014,391	-		ABIE40_RS24340	0.43	+1.1
1,014,391	-		ABIE40_RS24340	0.43	-0.2
1,014,391	-		ABIE40_RS24340	0.43	-1.7
1,014,391	-		ABIE40_RS24340	0.43	-0.7
1,014,461	+		ABIE40_RS24340	0.51	+2.3
1,014,492	+		ABIE40_RS24340	0.55	-0.1
1,014,492	+		ABIE40_RS24340	0.55	-0.3
1,014,493	-		ABIE40_RS24340	0.55	-0.9
1,014,493	-		ABIE40_RS24340	0.55	+0.4
1,014,498	+		ABIE40_RS24340	0.56	-0.1
1,014,498	+		ABIE40_RS24340	0.56	+0.8
1,014,499	-		ABIE40_RS24340	0.56	-0.7
1,014,525	+		ABIE40_RS24340	0.59	-0.4
1,014,525	+		ABIE40_RS24340	0.59	-1.3
1,014,525	+		ABIE40_RS24340	0.59	+0.9
1,014,525	+		ABIE40_RS24340	0.59	+1.0
1,014,525	+		ABIE40_RS24340	0.59	+0.2
1,014,525	+		ABIE40_RS24340	0.59	-0.5
1,014,525	+		ABIE40_RS24340	0.59	-0.3
1,014,525	+		ABIE40_RS24340	0.59	-0.1
1,014,526	-		ABIE40_RS24340	0.59	-0.2
1,014,526	-		ABIE40_RS24340	0.59	-0.0
1,014,526	-		ABIE40_RS24340	0.59	-0.1
1,014,526	-		ABIE40_RS24340	0.59	-0.4
1,014,526	-		ABIE40_RS24340	0.59	-1.9
1,014,526	-		ABIE40_RS24340	0.59	-0.5
1,014,526	-		ABIE40_RS24340	0.59	-0.7
1,014,526	-		ABIE40_RS24340	0.59	+0.7
1,014,526	-		ABIE40_RS24340	0.59	+0.1
1,014,671	-		ABIE40_RS24340	0.76	-0.2
1,014,671	-		ABIE40_RS24340	0.76	-2.4
1,014,671	-		ABIE40_RS24340	0.76	+1.7
1,014,681	+		ABIE40_RS24340	0.77	+0.1
1,014,681	+		ABIE40_RS24340	0.77	-0.7
1,014,682	-		ABIE40_RS24340	0.77	-0.4
1,014,836	+				-0.7
1,014,836	+				-0.7
1,014,837	-				+0.4
1,014,837	-				-0.1
1,014,905	+				-1.2
1,014,906	-				-0.1