Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22930

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22925 and ABIE40_RS22930 are separated by 7 nucleotidesABIE40_RS22930 and ABIE40_RS22935 are separated by 19 nucleotides ABIE40_RS22925: ABIE40_RS22925 - M20 aminoacylase family protein, at 731,499 to 732,698 _RS22925 ABIE40_RS22930: ABIE40_RS22930 - GNAT family N-acetyltransferase, at 732,706 to 733,251 _RS22930 ABIE40_RS22935: ABIE40_RS22935 - amino acid ABC transporter permease/ATP-binding protein, at 733,271 to 735,049 _RS22935 Position (kb) 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 731.878 kb on - strand, within ABIE40_RS22925at 731.878 kb on - strand, within ABIE40_RS22925at 732.309 kb on + strand, within ABIE40_RS22925at 732.309 kb on + strand, within ABIE40_RS22925at 732.310 kb on - strand, within ABIE40_RS22925at 732.310 kb on - strand, within ABIE40_RS22925at 732.311 kb on + strand, within ABIE40_RS22925at 732.311 kb on + strand, within ABIE40_RS22925at 732.564 kb on + strand, within ABIE40_RS22925at 732.564 kb on + strand, within ABIE40_RS22925at 732.565 kb on - strand, within ABIE40_RS22925at 732.634 kb on + strandat 732.634 kb on + strandat 732.635 kb on - strandat 732.635 kb on - strandat 732.635 kb on - strandat 732.651 kb on + strandat 732.652 kb on - strandat 732.691 kb on + strandat 732.714 kb on + strandat 732.714 kb on + strandat 732.714 kb on + strandat 732.715 kb on - strandat 732.715 kb on - strandat 732.715 kb on - strandat 732.725 kb on - strandat 732.781 kb on + strand, within ABIE40_RS22930at 732.781 kb on + strand, within ABIE40_RS22930at 732.782 kb on - strand, within ABIE40_RS22930at 732.782 kb on - strand, within ABIE40_RS22930at 732.782 kb on - strand, within ABIE40_RS22930at 732.782 kb on - strand, within ABIE40_RS22930at 732.802 kb on + strand, within ABIE40_RS22930at 732.803 kb on - strand, within ABIE40_RS22930at 732.803 kb on - strand, within ABIE40_RS22930at 732.931 kb on + strand, within ABIE40_RS22930at 732.931 kb on + strand, within ABIE40_RS22930at 733.046 kb on - strand, within ABIE40_RS22930at 733.057 kb on + strand, within ABIE40_RS22930at 733.057 kb on + strand, within ABIE40_RS22930at 733.057 kb on + strand, within ABIE40_RS22930at 733.057 kb on + strand, within ABIE40_RS22930at 733.099 kb on + strand, within ABIE40_RS22930at 733.100 kb on - strand, within ABIE40_RS22930at 733.100 kb on - strand, within ABIE40_RS22930at 733.115 kb on - strand, within ABIE40_RS22930at 733.153 kb on + strand, within ABIE40_RS22930at 733.154 kb on - strand, within ABIE40_RS22930at 733.194 kb on + strand, within ABIE40_RS22930at 733.212 kb on + strandat 733.213 kb on - strandat 733.213 kb on - strandat 733.213 kb on - strandat 733.347 kb on - strandat 733.347 kb on - strandat 733.347 kb on - strandat 733.424 kb on + strandat 733.424 kb on + strandat 733.424 kb on + strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.425 kb on - strandat 733.619 kb on + strand, within ABIE40_RS22935at 733.619 kb on + strand, within ABIE40_RS22935at 733.619 kb on + strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.620 kb on - strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.621 kb on + strand, within ABIE40_RS22935at 733.622 kb on - strand, within ABIE40_RS22935at 733.682 kb on + strand, within ABIE40_RS22935at 733.683 kb on - strand, within ABIE40_RS22935at 733.688 kb on + strand, within ABIE40_RS22935at 733.834 kb on + strand, within ABIE40_RS22935at 733.835 kb on - strand, within ABIE40_RS22935at 733.994 kb on + strand, within ABIE40_RS22935at 733.995 kb on - strand, within ABIE40_RS22935at 733.995 kb on - strand, within ABIE40_RS22935at 734.021 kb on + strand, within ABIE40_RS22935at 734.021 kb on + strand, within ABIE40_RS22935at 734.039 kb on + strand, within ABIE40_RS22935at 734.039 kb on + strand, within ABIE40_RS22935at 734.039 kb on + strand, within ABIE40_RS22935at 734.039 kb on + strand, within ABIE40_RS22935at 734.039 kb on + strand, within ABIE40_RS22935at 734.040 kb on - strand, within ABIE40_RS22935at 734.040 kb on - strand, within ABIE40_RS22935at 734.040 kb on - strand, within ABIE40_RS22935at 734.090 kb on + strand, within ABIE40_RS22935at 734.090 kb on + strand, within ABIE40_RS22935at 734.090 kb on + strand, within ABIE40_RS22935at 734.091 kb on - strand, within ABIE40_RS22935at 734.091 kb on - strand, within ABIE40_RS22935at 734.091 kb on - strand, within ABIE40_RS22935at 734.129 kb on + strand, within ABIE40_RS22935at 734.129 kb on + strand, within ABIE40_RS22935at 734.130 kb on - strand, within ABIE40_RS22935at 734.130 kb on - strand, within ABIE40_RS22935at 734.130 kb on - strand, within ABIE40_RS22935at 734.144 kb on + strand, within ABIE40_RS22935at 734.144 kb on + strand, within ABIE40_RS22935at 734.145 kb on - strand, within ABIE40_RS22935

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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731,878 - ABIE40_RS22925 0.32 +0.9
731,878 - ABIE40_RS22925 0.32 -1.0
732,309 + ABIE40_RS22925 0.68 +1.2
732,309 + ABIE40_RS22925 0.68 +0.8
732,310 - ABIE40_RS22925 0.68 +0.4
732,310 - ABIE40_RS22925 0.68 -0.1
732,311 + ABIE40_RS22925 0.68 +1.0
732,311 + ABIE40_RS22925 0.68 +0.4
732,564 + ABIE40_RS22925 0.89 -0.4
732,564 + ABIE40_RS22925 0.89 -0.0
732,565 - ABIE40_RS22925 0.89 +1.0
732,634 + -0.6
732,634 + +0.7
732,635 - +0.8
732,635 - +1.6
732,635 - +1.4
732,651 + -0.4
732,652 - -0.8
732,691 + -0.2
732,714 + +1.7
732,714 + +0.1
732,714 + +0.0
732,715 - +0.3
732,715 - -0.3
732,715 - +0.0
732,725 - -0.4
732,781 + ABIE40_RS22930 0.14 +0.6
732,781 + ABIE40_RS22930 0.14 -0.4
732,782 - ABIE40_RS22930 0.14 +1.4
732,782 - ABIE40_RS22930 0.14 +0.3
732,782 - ABIE40_RS22930 0.14 -0.7
732,782 - ABIE40_RS22930 0.14 +0.5
732,802 + ABIE40_RS22930 0.18 +0.4
732,803 - ABIE40_RS22930 0.18 -0.6
732,803 - ABIE40_RS22930 0.18 -0.6
732,931 + ABIE40_RS22930 0.41 +0.3
732,931 + ABIE40_RS22930 0.41 +1.6
733,046 - ABIE40_RS22930 0.62 +0.1
733,057 + ABIE40_RS22930 0.64 +1.0
733,057 + ABIE40_RS22930 0.64 -0.2
733,057 + ABIE40_RS22930 0.64 +0.6
733,057 + ABIE40_RS22930 0.64 +0.3
733,099 + ABIE40_RS22930 0.72 +2.6
733,100 - ABIE40_RS22930 0.72 +0.3
733,100 - ABIE40_RS22930 0.72 +0.2
733,115 - ABIE40_RS22930 0.75 +0.6
733,153 + ABIE40_RS22930 0.82 -0.2
733,154 - ABIE40_RS22930 0.82 +4.0
733,194 + ABIE40_RS22930 0.89 +0.0
733,212 + +0.8
733,213 - +1.6
733,213 - -0.4
733,213 - +0.8
733,347 - +2.4
733,347 - +0.9
733,347 - -0.3
733,424 + -1.1
733,424 + -0.3
733,424 + -0.6
733,425 - +0.9
733,425 - -0.3
733,425 - -1.4
733,425 - -0.1
733,425 - -0.5
733,425 - -2.8
733,619 + ABIE40_RS22935 0.20 +1.8
733,619 + ABIE40_RS22935 0.20 +1.2
733,619 + ABIE40_RS22935 0.20 +0.1
733,620 - ABIE40_RS22935 0.20 -0.3
733,620 - ABIE40_RS22935 0.20 +1.4
733,620 - ABIE40_RS22935 0.20 +0.3
733,620 - ABIE40_RS22935 0.20 -0.2
733,620 - ABIE40_RS22935 0.20 +0.5
733,621 + ABIE40_RS22935 0.20 -0.6
733,621 + ABIE40_RS22935 0.20 +1.4
733,621 + ABIE40_RS22935 0.20 -1.9
733,621 + ABIE40_RS22935 0.20 +0.4
733,621 + ABIE40_RS22935 0.20 -0.4
733,621 + ABIE40_RS22935 0.20 -1.5
733,621 + ABIE40_RS22935 0.20 -2.1
733,621 + ABIE40_RS22935 0.20 +0.8
733,622 - ABIE40_RS22935 0.20 +0.9
733,682 + ABIE40_RS22935 0.23 -0.2
733,683 - ABIE40_RS22935 0.23 +2.4
733,688 + ABIE40_RS22935 0.23 +1.6
733,834 + ABIE40_RS22935 0.32 -0.5
733,835 - ABIE40_RS22935 0.32 +0.3
733,994 + ABIE40_RS22935 0.41 +2.4
733,995 - ABIE40_RS22935 0.41 +0.1
733,995 - ABIE40_RS22935 0.41 +0.7
734,021 + ABIE40_RS22935 0.42 -1.0
734,021 + ABIE40_RS22935 0.42 +0.2
734,039 + ABIE40_RS22935 0.43 -1.1
734,039 + ABIE40_RS22935 0.43 +1.8
734,039 + ABIE40_RS22935 0.43 +2.7
734,039 + ABIE40_RS22935 0.43 -0.2
734,039 + ABIE40_RS22935 0.43 +1.2
734,040 - ABIE40_RS22935 0.43 -0.2
734,040 - ABIE40_RS22935 0.43 -0.4
734,040 - ABIE40_RS22935 0.43 -1.1
734,090 + ABIE40_RS22935 0.46 -0.4
734,090 + ABIE40_RS22935 0.46 -0.1
734,090 + ABIE40_RS22935 0.46 +0.2
734,091 - ABIE40_RS22935 0.46 -1.2
734,091 - ABIE40_RS22935 0.46 +1.3
734,091 - ABIE40_RS22935 0.46 +0.2
734,129 + ABIE40_RS22935 0.48 -0.6
734,129 + ABIE40_RS22935 0.48 +2.4
734,130 - ABIE40_RS22935 0.48 -0.1
734,130 - ABIE40_RS22935 0.48 +0.0
734,130 - ABIE40_RS22935 0.48 +0.1
734,144 + ABIE40_RS22935 0.49 +0.8
734,144 + ABIE40_RS22935 0.49 +0.9
734,145 - ABIE40_RS22935 0.49 +0.4

Or see this region's nucleotide sequence