Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS18630

Experiment: Gelatin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gelatin (C)
3,726,228	+				-0.4
3,726,295	+				+0.6
3,726,295	+				-0.1
3,726,295	+				-0.5
3,726,295	+				+0.4
3,726,296	-		ABIE40_RS18625	0.10	-1.3
3,726,296	-		ABIE40_RS18625	0.10	+1.3
3,726,296	-		ABIE40_RS18625	0.10	+1.1
3,726,297	+		ABIE40_RS18625	0.10	-0.4
3,726,298	-		ABIE40_RS18625	0.10	+1.0
3,726,298	-		ABIE40_RS18625	0.10	+0.2
3,726,301	+		ABIE40_RS18625	0.11	+0.6
3,726,301	+		ABIE40_RS18625	0.11	+0.6
3,726,312	+		ABIE40_RS18625	0.12	+0.5
3,726,312	+		ABIE40_RS18625	0.12	+1.9
3,726,607	+		ABIE40_RS18625	0.40	+0.0
3,726,607	+		ABIE40_RS18625	0.40	+0.4
3,726,607	+		ABIE40_RS18625	0.40	-0.0
3,726,607	+		ABIE40_RS18625	0.40	+0.1
3,726,608	-		ABIE40_RS18625	0.41	-0.2
3,726,608	-		ABIE40_RS18625	0.41	-0.4
3,726,608	-		ABIE40_RS18625	0.41	+1.6
3,726,608	-		ABIE40_RS18625	0.41	-0.5
3,726,608	-		ABIE40_RS18625	0.41	-0.5
3,726,608	-		ABIE40_RS18625	0.41	-3.8
3,726,618	+		ABIE40_RS18625	0.42	+0.8
3,726,618	+		ABIE40_RS18625	0.42	-1.2
3,726,618	+		ABIE40_RS18625	0.42	-0.5
3,726,619	-		ABIE40_RS18625	0.42	-0.9
3,726,619	-		ABIE40_RS18625	0.42	+0.4
3,726,706	-		ABIE40_RS18625	0.50	+0.2
3,726,745	+		ABIE40_RS18625	0.54	-2.3
3,726,775	-		ABIE40_RS18625	0.57	-0.3
3,726,823	+		ABIE40_RS18625	0.62	+4.1
3,726,823	+		ABIE40_RS18625	0.62	+1.6
3,726,823	+		ABIE40_RS18625	0.62	-0.7
3,726,823	+		ABIE40_RS18625	0.62	-1.6
3,726,824	-		ABIE40_RS18625	0.62	-1.3
3,726,865	+		ABIE40_RS18625	0.66	-3.7
3,726,865	+		ABIE40_RS18625	0.66	-0.2
3,726,865	+		ABIE40_RS18625	0.66	-1.9
3,726,865	+		ABIE40_RS18625	0.66	-0.1
3,726,865	+		ABIE40_RS18625	0.66	+1.1
3,726,866	-		ABIE40_RS18625	0.66	-1.1
3,726,866	-		ABIE40_RS18625	0.66	-1.5
3,726,866	-		ABIE40_RS18625	0.66	-0.2
3,726,866	-		ABIE40_RS18625	0.66	+2.5
3,726,867	+		ABIE40_RS18625	0.66	-0.1
3,726,867	+		ABIE40_RS18625	0.66	+0.8
3,726,867	+		ABIE40_RS18625	0.66	-0.9
3,726,867	+		ABIE40_RS18625	0.66	-1.8
3,726,867	+		ABIE40_RS18625	0.66	-0.3
3,726,867	+		ABIE40_RS18625	0.66	-1.0
3,726,868	-		ABIE40_RS18625	0.66	-0.2
3,726,868	-		ABIE40_RS18625	0.66	-0.2
3,726,868	-		ABIE40_RS18625	0.66	-0.9
3,726,868	-		ABIE40_RS18625	0.66	-0.0
3,726,868	-		ABIE40_RS18625	0.66	-0.3
3,726,868	-		ABIE40_RS18625	0.66	-0.9
3,726,883	+		ABIE40_RS18625	0.67	-0.8
3,726,943	+		ABIE40_RS18625	0.73	+0.7
3,726,943	+		ABIE40_RS18625	0.73	-0.3
3,726,943	+		ABIE40_RS18625	0.73	+1.1
3,726,943	+		ABIE40_RS18625	0.73	-1.9
3,726,943	+		ABIE40_RS18625	0.73	-0.5
3,726,943	+		ABIE40_RS18625	0.73	+0.3
3,726,944	-		ABIE40_RS18625	0.73	-3.0
3,726,944	-		ABIE40_RS18625	0.73	-0.4
3,726,944	-		ABIE40_RS18625	0.73	+0.3
3,726,944	-		ABIE40_RS18625	0.73	-1.4
3,726,944	-		ABIE40_RS18625	0.73	+0.2
3,726,944	-		ABIE40_RS18625	0.73	-2.9
3,726,944	-		ABIE40_RS18625	0.73	+0.8
3,726,944	-		ABIE40_RS18625	0.73	+0.1
3,726,944	-		ABIE40_RS18625	0.73	-0.9
3,726,944	-		ABIE40_RS18625	0.73	-1.2
3,726,944	-		ABIE40_RS18625	0.73	-0.3
3,726,988	-		ABIE40_RS18625	0.78	-0.1
3,727,362	+				-0.3
3,727,362	+				+3.1
3,727,362	+				-0.8
3,727,362	+				-0.5
3,727,362	+				-0.1
3,727,363	-				-0.6
3,727,363	-				-0.3
3,727,363	-				-0.7
3,727,363	-				-0.0
3,727,363	-				-0.5
3,727,363	-				+0.9
3,727,363	-				-0.6
3,727,363	-				+0.4
3,727,363	-				-3.1
3,727,363	-				+0.1
3,727,364	+				-0.2
3,727,365	-				+0.8
3,727,417	+		ABIE40_RS18630	0.12	-2.3
3,727,623	+		ABIE40_RS18630	0.25	+1.3
3,727,623	+		ABIE40_RS18630	0.25	-0.0
3,727,623	+		ABIE40_RS18630	0.25	-0.9
3,727,623	+		ABIE40_RS18630	0.25	-1.1
3,727,623	+		ABIE40_RS18630	0.25	-0.2
3,727,623	+		ABIE40_RS18630	0.25	-0.7
3,727,623	+		ABIE40_RS18630	0.25	+0.1
3,727,623	+		ABIE40_RS18630	0.25	-0.5
3,727,623	+		ABIE40_RS18630	0.25	-0.5
3,727,623	-		ABIE40_RS18630	0.25	-0.6
3,727,624	-		ABIE40_RS18630	0.25	-1.1
3,727,624	-		ABIE40_RS18630	0.25	+0.9
3,727,624	-		ABIE40_RS18630	0.25	-0.0
3,727,624	-		ABIE40_RS18630	0.25	-0.3
3,727,624	-		ABIE40_RS18630	0.25	+2.1
3,727,624	-		ABIE40_RS18630	0.25	+0.6
3,727,624	-		ABIE40_RS18630	0.25	+0.8
3,727,624	-		ABIE40_RS18630	0.25	-1.0
3,727,624	-		ABIE40_RS18630	0.25	+0.1
3,727,905	+		ABIE40_RS18630	0.42	-0.6
3,727,906	-		ABIE40_RS18630	0.42	+0.6
3,728,225	+		ABIE40_RS18630	0.62	-3.0
3,728,225	+		ABIE40_RS18630	0.62	+0.1
3,728,225	+		ABIE40_RS18630	0.62	-1.3
3,728,225	+		ABIE40_RS18630	0.62	-0.7
3,728,225	+		ABIE40_RS18630	0.62	+0.0
3,728,226	-		ABIE40_RS18630	0.62	-2.9
3,728,226	-		ABIE40_RS18630	0.62	-0.4
3,728,226	-		ABIE40_RS18630	0.62	+0.6
3,728,226	-		ABIE40_RS18630	0.62	+0.1
3,728,226	-		ABIE40_RS18630	0.62	-0.2
3,728,226	-		ABIE40_RS18630	0.62	+0.5
3,728,226	-		ABIE40_RS18630	0.62	+0.6
3,728,227	+		ABIE40_RS18630	0.62	+0.8
3,728,227	+		ABIE40_RS18630	0.62	+0.2
3,728,227	+		ABIE40_RS18630	0.62	+2.4
3,728,227	+		ABIE40_RS18630	0.62	-0.4
3,728,227	+		ABIE40_RS18630	0.62	+0.1
3,728,227	+		ABIE40_RS18630	0.62	+0.3
3,728,228	-		ABIE40_RS18630	0.62	-1.4
3,728,228	-		ABIE40_RS18630	0.62	+0.3
3,728,228	-		ABIE40_RS18630	0.62	-0.4
3,728,228	-		ABIE40_RS18630	0.62	-1.2
3,728,229	+		ABIE40_RS18630	0.62	-0.1
3,728,293	+		ABIE40_RS18630	0.66	-0.4
3,728,293	+		ABIE40_RS18630	0.66	+0.4
3,728,294	-		ABIE40_RS18630	0.66	-0.9
3,728,368	+		ABIE40_RS18630	0.70	-0.2
3,728,368	+		ABIE40_RS18630	0.70	-0.1
3,728,369	-		ABIE40_RS18630	0.70	+0.4
3,728,369	-		ABIE40_RS18630	0.70	+0.8
3,728,514	+		ABIE40_RS18630	0.79	-1.4
3,728,514	+		ABIE40_RS18630	0.79	+0.9
3,728,515	-		ABIE40_RS18630	0.79	-1.1
3,728,515	-		ABIE40_RS18630	0.79	+0.4
3,728,515	-		ABIE40_RS18630	0.79	+0.6
3,728,515	-		ABIE40_RS18630	0.79	+0.2
3,728,534	+		ABIE40_RS18630	0.81	-0.1
3,728,714	-				+0.4
3,728,718	+				+0.4
3,728,718	+				+0.1
3,728,718	+				+1.1
3,728,718	+				-0.8
3,728,718	+				-0.0
3,728,718	+				-0.2
3,728,718	+				-0.2
3,728,719	-				-0.3
3,728,719	-				+1.0
3,728,719	-				-0.5
3,728,719	-				-0.1
3,728,719	-				-1.0
3,728,736	+				+0.3
3,728,737	-				-1.1
3,728,737	-				+0.6
3,728,737	-				-0.8
3,728,782	+				+0.3
3,728,782	+				+0.7
3,728,783	-				-1.2
3,728,783	-				-0.2
3,728,783	-				-0.1
3,728,783	-				-0.1
3,728,783	-				+0.1
3,728,853	+				-0.0
3,728,854	-				+1.0
3,729,123	+		ABIE40_RS18635	0.40	-0.2
3,729,351	+		ABIE40_RS18635	0.72	+0.0
3,729,381	+		ABIE40_RS18635	0.76	-0.3
3,729,382	-		ABIE40_RS18635	0.76	+0.1
3,729,382	-		ABIE40_RS18635	0.76	-1.2
3,729,382	-		ABIE40_RS18635	0.76	+0.2
3,729,446	-		ABIE40_RS18635	0.85	-2.9
3,729,446	-		ABIE40_RS18635	0.85	-2.6
3,729,446	-		ABIE40_RS18635	0.85	-0.2
3,729,446	-		ABIE40_RS18635	0.85	-0.7
3,729,499	+				-0.3
3,729,499	+				-1.8
3,729,500	-				+0.9
3,729,516	+				-0.3
3,729,516	+				+0.0
3,729,516	+				+0.5
3,729,517	-				-0.2
3,729,609	+				+1.0
3,729,609	+				-0.1
3,729,633	-				-1.8
3,729,633	-				-1.4
3,729,633	-				-0.1
3,729,649	+				+1.0
3,729,649	+				+0.3
3,729,650	-				-0.3
3,729,664	+				-0.3
3,729,665	-				-1.2
3,729,688	+				+1.9
3,729,689	-				+0.2
3,729,689	-				-0.9
3,729,704	-				-0.5