Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16430

Experiment: Gelatin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gelatin (C)
3,259,973	+		ABIE40_RS16425	0.81	+1.9
3,259,973	+		ABIE40_RS16425	0.81	+0.9
3,259,973	+		ABIE40_RS16425	0.81	-0.5
3,259,973	+		ABIE40_RS16425	0.81	-0.9
3,259,974	-		ABIE40_RS16425	0.81	+0.1
3,259,974	-		ABIE40_RS16425	0.81	+0.4
3,259,974	-		ABIE40_RS16425	0.81	-0.8
3,259,974	-		ABIE40_RS16425	0.81	-0.6
3,259,974	-		ABIE40_RS16425	0.81	-0.1
3,259,974	-		ABIE40_RS16425	0.81	-1.1
3,259,986	+		ABIE40_RS16425	0.82	+3.5
3,259,986	+		ABIE40_RS16425	0.82	+1.4
3,259,987	-		ABIE40_RS16425	0.82	+1.1
3,259,987	-		ABIE40_RS16425	0.82	-0.4
3,260,132	+		ABIE40_RS16425	0.89	-0.4
3,260,133	-		ABIE40_RS16425	0.89	-0.6
3,260,133	-		ABIE40_RS16425	0.89	-1.8
3,260,159	+				-0.1
3,260,178	-				+0.2
3,260,204	+				-0.5
3,260,204	+				-0.9
3,260,204	+				-0.9
3,260,205	-				-0.1
3,260,205	-				-0.2
3,260,205	-				-0.7
3,260,262	+				+0.0
3,260,263	-				+0.4
3,260,408	+				+0.1
3,260,408	+				-0.5
3,260,409	-				-1.3
3,260,409	-				+1.2
3,260,409	-				-1.1
3,260,409	-				+1.8
3,260,409	-				-1.3
3,260,471	-				-1.8
3,260,803	-				+0.3
3,260,803	-				-0.5
3,260,884	-		ABIE40_RS16430	0.12	+1.1
3,260,884	-		ABIE40_RS16430	0.12	-0.1
3,260,884	-		ABIE40_RS16430	0.12	-1.2
3,260,970	+		ABIE40_RS16430	0.20	-0.2
3,260,970	+		ABIE40_RS16430	0.20	+0.6
3,260,970	+		ABIE40_RS16430	0.20	+1.4
3,260,970	+		ABIE40_RS16430	0.20	-0.3
3,260,971	-		ABIE40_RS16430	0.20	-1.1
3,260,971	-		ABIE40_RS16430	0.20	-0.1
3,260,971	-		ABIE40_RS16430	0.20	-1.3
3,261,060	+		ABIE40_RS16430	0.28	-0.7
3,261,061	-		ABIE40_RS16430	0.29	-0.8
3,261,061	-		ABIE40_RS16430	0.29	-0.3
3,261,061	-		ABIE40_RS16430	0.29	-0.8
3,261,105	-		ABIE40_RS16430	0.33	-0.6
3,261,105	-		ABIE40_RS16430	0.33	-1.0
3,261,213	+		ABIE40_RS16430	0.43	+0.2
3,261,213	+		ABIE40_RS16430	0.43	-0.9
3,261,213	+		ABIE40_RS16430	0.43	-2.1
3,261,213	+		ABIE40_RS16430	0.43	-0.3
3,261,213	+		ABIE40_RS16430	0.43	+0.6
3,261,213	+		ABIE40_RS16430	0.43	+0.8
3,261,213	+		ABIE40_RS16430	0.43	-0.9
3,261,213	+		ABIE40_RS16430	0.43	-2.4
3,261,213	+		ABIE40_RS16430	0.43	-1.0
3,261,213	+		ABIE40_RS16430	0.43	+0.8
3,261,213	+		ABIE40_RS16430	0.43	-1.9
3,261,213	+		ABIE40_RS16430	0.43	-0.6
3,261,213	+		ABIE40_RS16430	0.43	+0.1
3,261,213	+		ABIE40_RS16430	0.43	+0.2
3,261,213	+		ABIE40_RS16430	0.43	-0.3
3,261,214	-		ABIE40_RS16430	0.43	-0.0
3,261,214	-		ABIE40_RS16430	0.43	-1.8
3,261,214	-		ABIE40_RS16430	0.43	-0.5
3,261,214	-		ABIE40_RS16430	0.43	-0.7
3,261,214	-		ABIE40_RS16430	0.43	-0.1
3,261,214	-		ABIE40_RS16430	0.43	+0.5
3,261,214	-		ABIE40_RS16430	0.43	+0.6
3,261,214	-		ABIE40_RS16430	0.43	-0.4
3,261,214	-		ABIE40_RS16430	0.43	-3.3
3,261,214	-		ABIE40_RS16430	0.43	-1.6
3,261,214	-		ABIE40_RS16430	0.43	-0.2
3,261,214	-		ABIE40_RS16430	0.43	-0.1
3,261,214	-		ABIE40_RS16430	0.43	-0.5
3,261,214	-		ABIE40_RS16430	0.43	+0.5
3,261,214	-		ABIE40_RS16430	0.43	+0.6
3,261,214	-		ABIE40_RS16430	0.43	-0.1
3,261,214	-		ABIE40_RS16430	0.43	-0.4
3,261,214	-		ABIE40_RS16430	0.43	-0.6
3,261,239	+		ABIE40_RS16430	0.45	+0.3
3,261,274	-		ABIE40_RS16430	0.49	+0.6
3,261,274	-		ABIE40_RS16430	0.49	-1.1
3,261,274	-		ABIE40_RS16430	0.49	-1.6
3,261,360	-		ABIE40_RS16430	0.57	-1.2
3,261,453	+		ABIE40_RS16430	0.66	+0.2
3,261,652	-		ABIE40_RS16430	0.85	+0.6
3,261,652	-		ABIE40_RS16430	0.85	-0.4
3,261,652	-		ABIE40_RS16430	0.85	-0.9
3,261,652	-		ABIE40_RS16430	0.85	+0.3
3,261,652	-		ABIE40_RS16430	0.85	+0.4
3,261,728	+				-1.1
3,261,728	+				+1.1
3,261,728	+				-1.1
3,261,729	-				-0.9
3,261,729	-				-0.7
3,261,791	+				-1.0
3,261,791	+				-0.8
3,261,791	+				-0.8
3,261,791	+				+0.9
3,261,791	+				-0.1
3,261,792	-				-1.6
3,261,855	+		ABIE40_RS16435	0.12	+1.1
3,261,855	+		ABIE40_RS16435	0.12	+0.1
3,261,856	-		ABIE40_RS16435	0.12	-1.3
3,261,856	-		ABIE40_RS16435	0.12	-0.2
3,261,856	-		ABIE40_RS16435	0.12	-1.8
3,261,856	-		ABIE40_RS16435	0.12	-0.3
3,261,864	+		ABIE40_RS16435	0.13	-0.9
3,261,864	+		ABIE40_RS16435	0.13	+1.4
3,261,864	+		ABIE40_RS16435	0.13	-0.2
3,261,865	-		ABIE40_RS16435	0.13	-0.5
3,261,865	-		ABIE40_RS16435	0.13	+1.9
3,261,898	+		ABIE40_RS16435	0.16	-0.6
3,261,898	+		ABIE40_RS16435	0.16	+0.9
3,261,898	+		ABIE40_RS16435	0.16	+1.7
3,261,899	-		ABIE40_RS16435	0.16	-2.1
3,261,899	-		ABIE40_RS16435	0.16	+0.5
3,261,899	-		ABIE40_RS16435	0.16	-2.6
3,261,899	-		ABIE40_RS16435	0.16	+1.4
3,261,956	+		ABIE40_RS16435	0.22	-0.1
3,261,956	+		ABIE40_RS16435	0.22	-1.9
3,261,956	+		ABIE40_RS16435	0.22	-1.8
3,261,957	-		ABIE40_RS16435	0.22	+0.9
3,261,957	-		ABIE40_RS16435	0.22	-0.4
3,261,957	-		ABIE40_RS16435	0.22	-1.2
3,261,957	-		ABIE40_RS16435	0.22	-1.0
3,261,957	-		ABIE40_RS16435	0.22	-2.4
3,261,957	-		ABIE40_RS16435	0.22	+0.3
3,262,015	+		ABIE40_RS16435	0.27	+0.2
3,262,015	+		ABIE40_RS16435	0.27	-2.9
3,262,016	-		ABIE40_RS16435	0.27	-2.4
3,262,016	-		ABIE40_RS16435	0.27	+0.6
3,262,016	-		ABIE40_RS16435	0.27	+0.1
3,262,016	-		ABIE40_RS16435	0.27	+0.9
3,262,016	-		ABIE40_RS16435	0.27	-0.5
3,262,016	-		ABIE40_RS16435	0.27	+0.7
3,262,016	-		ABIE40_RS16435	0.27	-3.1
3,262,016	-		ABIE40_RS16435	0.27	-0.4
3,262,023	+		ABIE40_RS16435	0.28	+0.5
3,262,023	+		ABIE40_RS16435	0.28	+0.5
3,262,023	+		ABIE40_RS16435	0.28	-0.4
3,262,023	+		ABIE40_RS16435	0.28	-1.2
3,262,023	+		ABIE40_RS16435	0.28	+1.1
3,262,024	-		ABIE40_RS16435	0.28	+0.2
3,262,024	-		ABIE40_RS16435	0.28	+0.2
3,262,024	-		ABIE40_RS16435	0.28	-0.1
3,262,024	-		ABIE40_RS16435	0.28	-0.5
3,262,024	-		ABIE40_RS16435	0.28	+0.2
3,262,024	-		ABIE40_RS16435	0.28	-0.3
3,262,024	-		ABIE40_RS16435	0.28	+0.1
3,262,024	-		ABIE40_RS16435	0.28	-0.1
3,262,024	-		ABIE40_RS16435	0.28	-0.3
3,262,025	+		ABIE40_RS16435	0.28	-0.6
3,262,025	+		ABIE40_RS16435	0.28	+0.4
3,262,025	+		ABIE40_RS16435	0.28	-1.0
3,262,025	+		ABIE40_RS16435	0.28	-1.5
3,262,025	+		ABIE40_RS16435	0.28	+2.5
3,262,026	-		ABIE40_RS16435	0.28	+1.2
3,262,026	-		ABIE40_RS16435	0.28	+0.1
3,262,026	-		ABIE40_RS16435	0.28	+1.9
3,262,026	-		ABIE40_RS16435	0.28	+1.9
3,262,026	-		ABIE40_RS16435	0.28	+0.6
3,262,026	-		ABIE40_RS16435	0.28	+0.6
3,262,100	+		ABIE40_RS16435	0.35	+0.8
3,262,100	+		ABIE40_RS16435	0.35	-0.6
3,262,101	-		ABIE40_RS16435	0.35	-0.3
3,262,101	-		ABIE40_RS16435	0.35	-0.6
3,262,158	-		ABIE40_RS16435	0.40	-0.9
3,262,268	+		ABIE40_RS16435	0.51	+0.6
3,262,268	+		ABIE40_RS16435	0.51	+0.0
3,262,268	+		ABIE40_RS16435	0.51	-0.1
3,262,268	+		ABIE40_RS16435	0.51	-0.9
3,262,268	+		ABIE40_RS16435	0.51	-1.2
3,262,268	+		ABIE40_RS16435	0.51	-1.9
3,262,268	+		ABIE40_RS16435	0.51	+0.4
3,262,268	+		ABIE40_RS16435	0.51	+0.7
3,262,268	+		ABIE40_RS16435	0.51	-1.5
3,262,268	+		ABIE40_RS16435	0.51	+0.1
3,262,268	+		ABIE40_RS16435	0.51	+0.3
3,262,269	-		ABIE40_RS16435	0.51	+0.4
3,262,269	-		ABIE40_RS16435	0.51	+0.0
3,262,269	-		ABIE40_RS16435	0.51	+1.0
3,262,269	-		ABIE40_RS16435	0.51	+0.8
3,262,269	-		ABIE40_RS16435	0.51	+0.8
3,262,269	-		ABIE40_RS16435	0.51	+1.1
3,262,269	-		ABIE40_RS16435	0.51	-0.5
3,262,269	-		ABIE40_RS16435	0.51	-1.0
3,262,269	-		ABIE40_RS16435	0.51	-0.2
3,262,269	-		ABIE40_RS16435	0.51	-1.8
3,262,269	-		ABIE40_RS16435	0.51	-0.9
3,262,373	+		ABIE40_RS16435	0.61	-2.3
3,262,373	+		ABIE40_RS16435	0.61	-0.1
3,262,373	+		ABIE40_RS16435	0.61	-0.1
3,262,407	-		ABIE40_RS16435	0.64	+0.5
3,262,475	+		ABIE40_RS16435	0.70	-2.3
3,262,574	+		ABIE40_RS16435	0.80	+0.6
3,262,574	+		ABIE40_RS16435	0.80	-0.1
3,262,574	+		ABIE40_RS16435	0.80	+1.0
3,262,575	-		ABIE40_RS16435	0.80	-0.3
3,262,593	+		ABIE40_RS16435	0.81	+0.2
3,262,593	+		ABIE40_RS16435	0.81	-1.0
3,262,594	-		ABIE40_RS16435	0.81	+0.1
3,262,594	-		ABIE40_RS16435	0.81	-0.9
3,262,594	-		ABIE40_RS16435	0.81	-2.2
3,262,594	-		ABIE40_RS16435	0.81	-1.2
3,262,602	-		ABIE40_RS16435	0.82	+0.6
3,262,642	+		ABIE40_RS16435	0.86	-2.1
3,262,643	-		ABIE40_RS16435	0.86	+0.1
3,262,643	-		ABIE40_RS16435	0.86	-0.1
3,262,643	-		ABIE40_RS16435	0.86	-0.2
3,262,680	-		ABIE40_RS16435	0.89	-1.1
3,262,724	+				-0.5
3,262,725	-				-2.1
3,262,725	-				-0.2
3,262,725	-				+0.4
3,262,765	+				-0.6
3,262,766	-				-1.1
3,262,766	-				-0.9
3,262,768	+				-2.1
3,262,768	+				+0.3
3,262,769	-				-1.1
3,262,769	-				-0.4