Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05120

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS05115 and ABIE40_RS05120 are separated by 184 nucleotidesABIE40_RS05120 and ABIE40_RS05125 are separated by 19 nucleotides ABIE40_RS05115: ABIE40_RS05115 - DUF1003 domain-containing protein, at 998,411 to 999,316 _RS05115 ABIE40_RS05120: ABIE40_RS05120 - diguanylate cyclase, at 999,501 to 1,001,222 _RS05120 ABIE40_RS05125: ABIE40_RS05125 - hypothetical protein, at 1,001,242 to 1,002,909 _RS05125 Position (kb) 999 1000 1001 1002Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 998.646 kb on + strand, within ABIE40_RS05115at 998.646 kb on + strand, within ABIE40_RS05115at 998.646 kb on + strand, within ABIE40_RS05115at 998.646 kb on + strand, within ABIE40_RS05115at 998.647 kb on - strand, within ABIE40_RS05115at 998.914 kb on - strand, within ABIE40_RS05115at 999.023 kb on - strand, within ABIE40_RS05115at 999.023 kb on - strand, within ABIE40_RS05115at 999.024 kb on + strand, within ABIE40_RS05115at 999.024 kb on + strand, within ABIE40_RS05115at 999.024 kb on + strand, within ABIE40_RS05115at 999.024 kb on + strand, within ABIE40_RS05115at 999.024 kb on + strand, within ABIE40_RS05115at 999.025 kb on - strand, within ABIE40_RS05115at 999.025 kb on - strand, within ABIE40_RS05115at 999.025 kb on - strand, within ABIE40_RS05115at 999.025 kb on - strand, within ABIE40_RS05115at 999.025 kb on - strand, within ABIE40_RS05115at 999.025 kb on - strand, within ABIE40_RS05115at 999.025 kb on - strand, within ABIE40_RS05115at 999.036 kb on + strand, within ABIE40_RS05115at 999.037 kb on - strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.061 kb on + strand, within ABIE40_RS05115at 999.062 kb on - strand, within ABIE40_RS05115at 999.062 kb on - strand, within ABIE40_RS05115at 999.062 kb on - strand, within ABIE40_RS05115at 999.062 kb on - strand, within ABIE40_RS05115at 999.062 kb on - strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.063 kb on + strand, within ABIE40_RS05115at 999.064 kb on - strand, within ABIE40_RS05115at 999.064 kb on - strand, within ABIE40_RS05115at 999.064 kb on - strand, within ABIE40_RS05115at 999.064 kb on - strand, within ABIE40_RS05115at 999.064 kb on - strand, within ABIE40_RS05115at 999.064 kb on - strand, within ABIE40_RS05115at 999.147 kb on + strand, within ABIE40_RS05115at 999.225 kb on + strand, within ABIE40_RS05115at 999.225 kb on + strand, within ABIE40_RS05115at 999.226 kb on - strandat 999.349 kb on + strandat 999.349 kb on + strandat 999.349 kb on + strandat 999.349 kb on + strandat 999.349 kb on + strandat 999.349 kb on + strandat 999.349 kb on + strandat 999.350 kb on - strandat 999.350 kb on - strandat 999.506 kb on + strandat 999.507 kb on - strandat 999.507 kb on - strandat 999.507 kb on - strandat 999.507 kb on - strandat 999.765 kb on + strand, within ABIE40_RS05120at 999.765 kb on + strand, within ABIE40_RS05120at 999.842 kb on + strand, within ABIE40_RS05120at 999.874 kb on - strand, within ABIE40_RS05120at 999.886 kb on - strand, within ABIE40_RS05120at 999.981 kb on + strand, within ABIE40_RS05120at 999.981 kb on + strand, within ABIE40_RS05120at 999.982 kb on - strand, within ABIE40_RS05120at 999.982 kb on - strand, within ABIE40_RS05120at 999.982 kb on - strand, within ABIE40_RS05120at 1000.093 kb on - strand, within ABIE40_RS05120at 1000.272 kb on + strand, within ABIE40_RS05120at 1000.272 kb on + strand, within ABIE40_RS05120at 1000.273 kb on - strand, within ABIE40_RS05120at 1000.273 kb on - strand, within ABIE40_RS05120at 1000.273 kb on - strand, within ABIE40_RS05120at 1000.273 kb on - strand, within ABIE40_RS05120at 1000.274 kb on - strand, within ABIE40_RS05120at 1000.407 kb on + strand, within ABIE40_RS05120at 1000.407 kb on + strand, within ABIE40_RS05120at 1000.407 kb on + strand, within ABIE40_RS05120at 1000.407 kb on + strand, within ABIE40_RS05120at 1000.408 kb on - strand, within ABIE40_RS05120at 1000.408 kb on - strand, within ABIE40_RS05120at 1000.409 kb on + strand, within ABIE40_RS05120at 1000.409 kb on + strand, within ABIE40_RS05120at 1000.410 kb on - strand, within ABIE40_RS05120at 1000.410 kb on - strand, within ABIE40_RS05120at 1000.491 kb on + strand, within ABIE40_RS05120at 1000.544 kb on - strand, within ABIE40_RS05120at 1000.593 kb on + strand, within ABIE40_RS05120at 1000.594 kb on - strand, within ABIE40_RS05120at 1000.594 kb on - strand, within ABIE40_RS05120at 1000.594 kb on - strand, within ABIE40_RS05120at 1001.100 kb on + strandat 1001.100 kb on + strandat 1001.100 kb on + strandat 1001.101 kb on - strandat 1001.124 kb on + strandat 1001.124 kb on + strandat 1001.257 kb on + strandat 1001.273 kb on - strandat 1001.327 kb on + strandat 1001.379 kb on - strandat 1001.379 kb on - strandat 1001.395 kb on + strandat 1001.395 kb on + strandat 1001.396 kb on - strandat 1001.396 kb on - strandat 1001.396 kb on - strandat 1001.396 kb on - strandat 1001.398 kb on + strandat 1001.407 kb on + strandat 1001.408 kb on - strandat 1001.423 kb on + strand, within ABIE40_RS05125at 1001.423 kb on + strand, within ABIE40_RS05125at 1001.423 kb on + strand, within ABIE40_RS05125at 1001.423 kb on + strand, within ABIE40_RS05125at 1001.423 kb on + strand, within ABIE40_RS05125at 1001.423 kb on + strand, within ABIE40_RS05125at 1001.424 kb on - strand, within ABIE40_RS05125at 1001.424 kb on - strand, within ABIE40_RS05125at 1001.424 kb on - strand, within ABIE40_RS05125at 1001.424 kb on - strand, within ABIE40_RS05125at 1001.424 kb on - strand, within ABIE40_RS05125at 1001.436 kb on + strand, within ABIE40_RS05125at 1001.437 kb on - strand, within ABIE40_RS05125at 1001.444 kb on + strand, within ABIE40_RS05125at 1001.445 kb on - strand, within ABIE40_RS05125at 1001.446 kb on - strand, within ABIE40_RS05125at 1001.466 kb on + strand, within ABIE40_RS05125at 1001.466 kb on + strand, within ABIE40_RS05125at 1001.467 kb on - strand, within ABIE40_RS05125at 1001.467 kb on - strand, within ABIE40_RS05125at 1001.564 kb on - strand, within ABIE40_RS05125at 1001.564 kb on - strand, within ABIE40_RS05125at 1001.606 kb on + strand, within ABIE40_RS05125at 1001.704 kb on + strand, within ABIE40_RS05125at 1001.810 kb on + strand, within ABIE40_RS05125at 1001.810 kb on + strand, within ABIE40_RS05125at 1001.810 kb on + strand, within ABIE40_RS05125at 1001.810 kb on + strand, within ABIE40_RS05125at 1001.811 kb on - strand, within ABIE40_RS05125at 1001.811 kb on - strand, within ABIE40_RS05125at 1001.811 kb on - strand, within ABIE40_RS05125at 1001.811 kb on - strand, within ABIE40_RS05125at 1001.811 kb on - strand, within ABIE40_RS05125at 1001.811 kb on - strand, within ABIE40_RS05125at 1001.899 kb on + strand, within ABIE40_RS05125at 1001.899 kb on + strand, within ABIE40_RS05125at 1001.899 kb on + strand, within ABIE40_RS05125at 1001.899 kb on + strand, within ABIE40_RS05125at 1001.900 kb on - strand, within ABIE40_RS05125at 1001.900 kb on - strand, within ABIE40_RS05125at 1001.916 kb on - strand, within ABIE40_RS05125at 1001.916 kb on - strand, within ABIE40_RS05125at 1001.926 kb on + strand, within ABIE40_RS05125at 1001.938 kb on + strand, within ABIE40_RS05125at 1001.939 kb on - strand, within ABIE40_RS05125at 1001.939 kb on - strand, within ABIE40_RS05125at 1001.939 kb on - strand, within ABIE40_RS05125at 1001.942 kb on + strand, within ABIE40_RS05125at 1001.983 kb on + strand, within ABIE40_RS05125at 1001.983 kb on + strand, within ABIE40_RS05125at 1001.983 kb on + strand, within ABIE40_RS05125at 1001.983 kb on + strand, within ABIE40_RS05125at 1001.983 kb on + strand, within ABIE40_RS05125at 1001.983 kb on + strand, within ABIE40_RS05125at 1001.984 kb on - strand, within ABIE40_RS05125at 1001.984 kb on - strand, within ABIE40_RS05125at 1002.070 kb on + strand, within ABIE40_RS05125at 1002.070 kb on + strand, within ABIE40_RS05125at 1002.100 kb on + strand, within ABIE40_RS05125at 1002.101 kb on - strand, within ABIE40_RS05125at 1002.101 kb on - strand, within ABIE40_RS05125at 1002.130 kb on + strand, within ABIE40_RS05125at 1002.130 kb on + strand, within ABIE40_RS05125at 1002.130 kb on + strand, within ABIE40_RS05125at 1002.131 kb on - strand, within ABIE40_RS05125at 1002.133 kb on - strand, within ABIE40_RS05125at 1002.133 kb on - strand, within ABIE40_RS05125at 1002.139 kb on + strand, within ABIE40_RS05125at 1002.139 kb on + strand, within ABIE40_RS05125at 1002.140 kb on - strand, within ABIE40_RS05125at 1002.175 kb on + strand, within ABIE40_RS05125at 1002.176 kb on - strand, within ABIE40_RS05125

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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998,646 + ABIE40_RS05115 0.26 +0.6
998,646 + ABIE40_RS05115 0.26 -0.7
998,646 + ABIE40_RS05115 0.26 +0.0
998,646 + ABIE40_RS05115 0.26 +0.7
998,647 - ABIE40_RS05115 0.26 +0.1
998,914 - ABIE40_RS05115 0.56 -0.1
999,023 - ABIE40_RS05115 0.68 -1.1
999,023 - ABIE40_RS05115 0.68 +0.9
999,024 + ABIE40_RS05115 0.68 +0.4
999,024 + ABIE40_RS05115 0.68 +0.5
999,024 + ABIE40_RS05115 0.68 -0.8
999,024 + ABIE40_RS05115 0.68 -0.0
999,024 + ABIE40_RS05115 0.68 -2.8
999,025 - ABIE40_RS05115 0.68 -0.7
999,025 - ABIE40_RS05115 0.68 -1.7
999,025 - ABIE40_RS05115 0.68 -0.7
999,025 - ABIE40_RS05115 0.68 -1.0
999,025 - ABIE40_RS05115 0.68 +0.5
999,025 - ABIE40_RS05115 0.68 +0.7
999,025 - ABIE40_RS05115 0.68 -0.2
999,036 + ABIE40_RS05115 0.69 -0.1
999,037 - ABIE40_RS05115 0.69 +0.3
999,061 + ABIE40_RS05115 0.72 -0.1
999,061 + ABIE40_RS05115 0.72 +0.6
999,061 + ABIE40_RS05115 0.72 -1.3
999,061 + ABIE40_RS05115 0.72 -0.4
999,061 + ABIE40_RS05115 0.72 -0.4
999,061 + ABIE40_RS05115 0.72 -1.7
999,061 + ABIE40_RS05115 0.72 -1.3
999,061 + ABIE40_RS05115 0.72 -1.1
999,061 + ABIE40_RS05115 0.72 +0.6
999,061 + ABIE40_RS05115 0.72 -1.0
999,062 - ABIE40_RS05115 0.72 -0.3
999,062 - ABIE40_RS05115 0.72 +0.2
999,062 - ABIE40_RS05115 0.72 +0.8
999,062 - ABIE40_RS05115 0.72 -0.1
999,062 - ABIE40_RS05115 0.72 -0.2
999,063 + ABIE40_RS05115 0.72 -0.9
999,063 + ABIE40_RS05115 0.72 -0.1
999,063 + ABIE40_RS05115 0.72 -1.1
999,063 + ABIE40_RS05115 0.72 -1.4
999,063 + ABIE40_RS05115 0.72 -0.8
999,063 + ABIE40_RS05115 0.72 +0.3
999,063 + ABIE40_RS05115 0.72 +0.3
999,063 + ABIE40_RS05115 0.72 -0.8
999,063 + ABIE40_RS05115 0.72 +0.7
999,063 + ABIE40_RS05115 0.72 -0.6
999,064 - ABIE40_RS05115 0.72 -0.7
999,064 - ABIE40_RS05115 0.72 -0.1
999,064 - ABIE40_RS05115 0.72 +0.9
999,064 - ABIE40_RS05115 0.72 -0.1
999,064 - ABIE40_RS05115 0.72 -0.4
999,064 - ABIE40_RS05115 0.72 -0.4
999,147 + ABIE40_RS05115 0.81 -0.1
999,225 + ABIE40_RS05115 0.90 -0.5
999,225 + ABIE40_RS05115 0.90 -0.8
999,226 - +1.9
999,349 + -0.7
999,349 + +0.5
999,349 + +0.1
999,349 + +0.1
999,349 + +0.3
999,349 + -2.7
999,349 + -0.1
999,350 - +0.2
999,350 - -1.4
999,506 + -0.0
999,507 - -1.9
999,507 - -0.2
999,507 - -1.4
999,507 - +0.6
999,765 + ABIE40_RS05120 0.15 -0.5
999,765 + ABIE40_RS05120 0.15 -0.1
999,842 + ABIE40_RS05120 0.20 -1.6
999,874 - ABIE40_RS05120 0.22 +0.8
999,886 - ABIE40_RS05120 0.22 -0.1
999,981 + ABIE40_RS05120 0.28 +0.2
999,981 + ABIE40_RS05120 0.28 -1.3
999,982 - ABIE40_RS05120 0.28 -0.0
999,982 - ABIE40_RS05120 0.28 +0.1
999,982 - ABIE40_RS05120 0.28 +1.9
1,000,093 - ABIE40_RS05120 0.34 -0.3
1,000,272 + ABIE40_RS05120 0.45 +0.1
1,000,272 + ABIE40_RS05120 0.45 -0.3
1,000,273 - ABIE40_RS05120 0.45 +0.4
1,000,273 - ABIE40_RS05120 0.45 +0.1
1,000,273 - ABIE40_RS05120 0.45 +0.1
1,000,273 - ABIE40_RS05120 0.45 -0.3
1,000,274 - ABIE40_RS05120 0.45 -1.2
1,000,407 + ABIE40_RS05120 0.53 +0.2
1,000,407 + ABIE40_RS05120 0.53 -1.6
1,000,407 + ABIE40_RS05120 0.53 -0.1
1,000,407 + ABIE40_RS05120 0.53 -0.3
1,000,408 - ABIE40_RS05120 0.53 +0.2
1,000,408 - ABIE40_RS05120 0.53 -0.1
1,000,409 + ABIE40_RS05120 0.53 -0.8
1,000,409 + ABIE40_RS05120 0.53 -0.9
1,000,410 - ABIE40_RS05120 0.53 +0.1
1,000,410 - ABIE40_RS05120 0.53 +0.5
1,000,491 + ABIE40_RS05120 0.57 -0.6
1,000,544 - ABIE40_RS05120 0.61 +0.3
1,000,593 + ABIE40_RS05120 0.63 -0.8
1,000,594 - ABIE40_RS05120 0.63 -1.9
1,000,594 - ABIE40_RS05120 0.63 -0.3
1,000,594 - ABIE40_RS05120 0.63 -1.1
1,001,100 + -0.9
1,001,100 + +0.6
1,001,100 + -1.7
1,001,101 - -0.9
1,001,124 + +0.2
1,001,124 + -0.8
1,001,257 + -2.3
1,001,273 - -0.1
1,001,327 + +1.3
1,001,379 - -0.7
1,001,379 - +0.4
1,001,395 + -0.9
1,001,395 + +0.4
1,001,396 - -1.6
1,001,396 - +1.4
1,001,396 - -1.9
1,001,396 - -1.4
1,001,398 + -1.9
1,001,407 + -0.0
1,001,408 - +0.3
1,001,423 + ABIE40_RS05125 0.11 +0.4
1,001,423 + ABIE40_RS05125 0.11 -0.8
1,001,423 + ABIE40_RS05125 0.11 -1.3
1,001,423 + ABIE40_RS05125 0.11 -0.7
1,001,423 + ABIE40_RS05125 0.11 +1.6
1,001,423 + ABIE40_RS05125 0.11 +1.9
1,001,424 - ABIE40_RS05125 0.11 -1.0
1,001,424 - ABIE40_RS05125 0.11 -1.3
1,001,424 - ABIE40_RS05125 0.11 -0.1
1,001,424 - ABIE40_RS05125 0.11 -2.2
1,001,424 - ABIE40_RS05125 0.11 -0.3
1,001,436 + ABIE40_RS05125 0.12 -1.0
1,001,437 - ABIE40_RS05125 0.12 +1.2
1,001,444 + ABIE40_RS05125 0.12 -0.1
1,001,445 - ABIE40_RS05125 0.12 +0.3
1,001,446 - ABIE40_RS05125 0.12 +0.8
1,001,466 + ABIE40_RS05125 0.13 +0.2
1,001,466 + ABIE40_RS05125 0.13 -1.7
1,001,467 - ABIE40_RS05125 0.13 -0.4
1,001,467 - ABIE40_RS05125 0.13 -0.1
1,001,564 - ABIE40_RS05125 0.19 -0.7
1,001,564 - ABIE40_RS05125 0.19 -0.1
1,001,606 + ABIE40_RS05125 0.22 -0.1
1,001,704 + ABIE40_RS05125 0.28 -2.2
1,001,810 + ABIE40_RS05125 0.34 -0.4
1,001,810 + ABIE40_RS05125 0.34 -1.4
1,001,810 + ABIE40_RS05125 0.34 -2.5
1,001,810 + ABIE40_RS05125 0.34 +0.1
1,001,811 - ABIE40_RS05125 0.34 -2.8
1,001,811 - ABIE40_RS05125 0.34 -1.1
1,001,811 - ABIE40_RS05125 0.34 -0.7
1,001,811 - ABIE40_RS05125 0.34 -1.1
1,001,811 - ABIE40_RS05125 0.34 -0.5
1,001,811 - ABIE40_RS05125 0.34 -0.8
1,001,899 + ABIE40_RS05125 0.39 -0.0
1,001,899 + ABIE40_RS05125 0.39 +2.6
1,001,899 + ABIE40_RS05125 0.39 -0.7
1,001,899 + ABIE40_RS05125 0.39 -1.7
1,001,900 - ABIE40_RS05125 0.39 +0.6
1,001,900 - ABIE40_RS05125 0.39 -0.6
1,001,916 - ABIE40_RS05125 0.40 +0.3
1,001,916 - ABIE40_RS05125 0.40 -0.0
1,001,926 + ABIE40_RS05125 0.41 +0.1
1,001,938 + ABIE40_RS05125 0.42 +0.5
1,001,939 - ABIE40_RS05125 0.42 +0.8
1,001,939 - ABIE40_RS05125 0.42 +0.1
1,001,939 - ABIE40_RS05125 0.42 -1.0
1,001,942 + ABIE40_RS05125 0.42 -0.5
1,001,983 + ABIE40_RS05125 0.44 +0.5
1,001,983 + ABIE40_RS05125 0.44 -0.6
1,001,983 + ABIE40_RS05125 0.44 +0.3
1,001,983 + ABIE40_RS05125 0.44 +0.9
1,001,983 + ABIE40_RS05125 0.44 -0.5
1,001,983 + ABIE40_RS05125 0.44 -0.1
1,001,984 - ABIE40_RS05125 0.44 -0.7
1,001,984 - ABIE40_RS05125 0.44 -0.3
1,002,070 + ABIE40_RS05125 0.50 +0.1
1,002,070 + ABIE40_RS05125 0.50 -1.1
1,002,100 + ABIE40_RS05125 0.51 -1.6
1,002,101 - ABIE40_RS05125 0.51 -1.1
1,002,101 - ABIE40_RS05125 0.51 -0.2
1,002,130 + ABIE40_RS05125 0.53 +0.3
1,002,130 + ABIE40_RS05125 0.53 -0.7
1,002,130 + ABIE40_RS05125 0.53 +0.0
1,002,131 - ABIE40_RS05125 0.53 -1.0
1,002,133 - ABIE40_RS05125 0.53 +0.0
1,002,133 - ABIE40_RS05125 0.53 -0.5
1,002,139 + ABIE40_RS05125 0.54 -0.2
1,002,139 + ABIE40_RS05125 0.54 -1.5
1,002,140 - ABIE40_RS05125 0.54 -1.3
1,002,175 + ABIE40_RS05125 0.56 -0.3
1,002,176 - ABIE40_RS05125 0.56 -0.7

Or see this region's nucleotide sequence