Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS05110 and ABIE40_RS05115 are separated by 11 nucleotides ABIE40_RS05115 and ABIE40_RS05120 are separated by 184 nucleotides
ABIE40_RS05110: ABIE40_RS05110 - EAL domain-containing protein, at 996,807 to 998,399
_RS05110
ABIE40_RS05115: ABIE40_RS05115 - DUF1003 domain-containing protein, at 998,411 to 999,316
_RS05115
ABIE40_RS05120: ABIE40_RS05120 - diguanylate cyclase, at 999,501 to 1,001,222
_RS05120
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 997.500 kb on + strand, within ABIE40_RS05110 at 997.500 kb on + strand, within ABIE40_RS05110 at 997.501 kb on - strand, within ABIE40_RS05110 at 997.501 kb on - strand, within ABIE40_RS05110 at 997.501 kb on - strand, within ABIE40_RS05110 at 997.581 kb on + strand, within ABIE40_RS05110 at 997.581 kb on + strand, within ABIE40_RS05110 at 997.582 kb on - strand, within ABIE40_RS05110 at 997.582 kb on - strand, within ABIE40_RS05110 at 997.582 kb on - strand, within ABIE40_RS05110 at 997.582 kb on - strand, within ABIE40_RS05110 at 997.657 kb on - strand, within ABIE40_RS05110 at 998.077 kb on - strand, within ABIE40_RS05110 at 998.091 kb on + strand, within ABIE40_RS05110 at 998.091 kb on + strand, within ABIE40_RS05110 at 998.092 kb on - strand, within ABIE40_RS05110 at 998.092 kb on - strand, within ABIE40_RS05110 at 998.092 kb on - strand, within ABIE40_RS05110 at 998.121 kb on + strand, within ABIE40_RS05110 at 998.259 kb on + strand at 998.259 kb on + strand at 998.416 kb on + strand at 998.416 kb on + strand at 998.416 kb on + strand at 998.417 kb on - strand at 998.417 kb on - strand at 998.417 kb on - strand at 998.646 kb on + strand, within ABIE40_RS05115 at 998.646 kb on + strand, within ABIE40_RS05115 at 998.646 kb on + strand, within ABIE40_RS05115 at 998.646 kb on + strand, within ABIE40_RS05115 at 998.647 kb on - strand, within ABIE40_RS05115 at 998.914 kb on - strand, within ABIE40_RS05115 at 999.023 kb on - strand, within ABIE40_RS05115 at 999.023 kb on - strand, within ABIE40_RS05115 at 999.024 kb on + strand, within ABIE40_RS05115 at 999.024 kb on + strand, within ABIE40_RS05115 at 999.024 kb on + strand, within ABIE40_RS05115 at 999.024 kb on + strand, within ABIE40_RS05115 at 999.024 kb on + strand, within ABIE40_RS05115 at 999.025 kb on - strand, within ABIE40_RS05115 at 999.025 kb on - strand, within ABIE40_RS05115 at 999.025 kb on - strand, within ABIE40_RS05115 at 999.025 kb on - strand, within ABIE40_RS05115 at 999.025 kb on - strand, within ABIE40_RS05115 at 999.025 kb on - strand, within ABIE40_RS05115 at 999.025 kb on - strand, within ABIE40_RS05115 at 999.036 kb on + strand, within ABIE40_RS05115 at 999.037 kb on - strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.061 kb on + strand, within ABIE40_RS05115 at 999.062 kb on - strand, within ABIE40_RS05115 at 999.062 kb on - strand, within ABIE40_RS05115 at 999.062 kb on - strand, within ABIE40_RS05115 at 999.062 kb on - strand, within ABIE40_RS05115 at 999.062 kb on - strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.063 kb on + strand, within ABIE40_RS05115 at 999.064 kb on - strand, within ABIE40_RS05115 at 999.064 kb on - strand, within ABIE40_RS05115 at 999.064 kb on - strand, within ABIE40_RS05115 at 999.064 kb on - strand, within ABIE40_RS05115 at 999.064 kb on - strand, within ABIE40_RS05115 at 999.064 kb on - strand, within ABIE40_RS05115 at 999.147 kb on + strand, within ABIE40_RS05115 at 999.225 kb on + strand, within ABIE40_RS05115 at 999.225 kb on + strand, within ABIE40_RS05115 at 999.226 kb on - strand at 999.349 kb on + strand at 999.349 kb on + strand at 999.349 kb on + strand at 999.349 kb on + strand at 999.349 kb on + strand at 999.349 kb on + strand at 999.349 kb on + strand at 999.350 kb on - strand at 999.350 kb on - strand at 999.506 kb on + strand at 999.507 kb on - strand at 999.507 kb on - strand at 999.507 kb on - strand at 999.507 kb on - strand at 999.765 kb on + strand, within ABIE40_RS05120 at 999.765 kb on + strand, within ABIE40_RS05120 at 999.842 kb on + strand, within ABIE40_RS05120 at 999.874 kb on - strand, within ABIE40_RS05120 at 999.886 kb on - strand, within ABIE40_RS05120 at 999.981 kb on + strand, within ABIE40_RS05120 at 999.981 kb on + strand, within ABIE40_RS05120 at 999.982 kb on - strand, within ABIE40_RS05120 at 999.982 kb on - strand, within ABIE40_RS05120 at 999.982 kb on - strand, within ABIE40_RS05120 at 1000.093 kb on - strand, within ABIE40_RS05120 at 1000.272 kb on + strand, within ABIE40_RS05120 at 1000.272 kb on + strand, within ABIE40_RS05120 at 1000.273 kb on - strand, within ABIE40_RS05120 at 1000.273 kb on - strand, within ABIE40_RS05120 at 1000.273 kb on - strand, within ABIE40_RS05120 at 1000.273 kb on - strand, within ABIE40_RS05120 at 1000.274 kb on - strand, within ABIE40_RS05120
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 997,500 + ABIE40_RS05110 0.44 -1.1 997,500 + ABIE40_RS05110 0.44 -0.1 997,501 - ABIE40_RS05110 0.44 -1.5 997,501 - ABIE40_RS05110 0.44 -2.0 997,501 - ABIE40_RS05110 0.44 +0.6 997,581 + ABIE40_RS05110 0.49 -0.2 997,581 + ABIE40_RS05110 0.49 -0.4 997,582 - ABIE40_RS05110 0.49 +0.8 997,582 - ABIE40_RS05110 0.49 +1.1 997,582 - ABIE40_RS05110 0.49 +0.3 997,582 - ABIE40_RS05110 0.49 -0.5 997,657 - ABIE40_RS05110 0.53 -0.8 998,077 - ABIE40_RS05110 0.80 -0.6 998,091 + ABIE40_RS05110 0.81 -0.5 998,091 + ABIE40_RS05110 0.81 +0.1 998,092 - ABIE40_RS05110 0.81 -0.1 998,092 - ABIE40_RS05110 0.81 +0.1 998,092 - ABIE40_RS05110 0.81 -0.1 998,121 + ABIE40_RS05110 0.82 +0.7 998,259 + -1.4 998,259 + -1.8 998,416 + +0.3 998,416 + +1.2 998,416 + -0.4 998,417 - +1.0 998,417 - -0.3 998,417 - +1.2 998,646 + ABIE40_RS05115 0.26 +0.6 998,646 + ABIE40_RS05115 0.26 -0.7 998,646 + ABIE40_RS05115 0.26 +0.0 998,646 + ABIE40_RS05115 0.26 +0.7 998,647 - ABIE40_RS05115 0.26 +0.1 998,914 - ABIE40_RS05115 0.56 -0.1 999,023 - ABIE40_RS05115 0.68 -1.1 999,023 - ABIE40_RS05115 0.68 +0.9 999,024 + ABIE40_RS05115 0.68 +0.4 999,024 + ABIE40_RS05115 0.68 +0.5 999,024 + ABIE40_RS05115 0.68 -0.8 999,024 + ABIE40_RS05115 0.68 -0.0 999,024 + ABIE40_RS05115 0.68 -2.8 999,025 - ABIE40_RS05115 0.68 -0.7 999,025 - ABIE40_RS05115 0.68 -1.7 999,025 - ABIE40_RS05115 0.68 -0.7 999,025 - ABIE40_RS05115 0.68 -1.0 999,025 - ABIE40_RS05115 0.68 +0.5 999,025 - ABIE40_RS05115 0.68 +0.7 999,025 - ABIE40_RS05115 0.68 -0.2 999,036 + ABIE40_RS05115 0.69 -0.1 999,037 - ABIE40_RS05115 0.69 +0.3 999,061 + ABIE40_RS05115 0.72 -0.1 999,061 + ABIE40_RS05115 0.72 +0.6 999,061 + ABIE40_RS05115 0.72 -1.3 999,061 + ABIE40_RS05115 0.72 -0.4 999,061 + ABIE40_RS05115 0.72 -0.4 999,061 + ABIE40_RS05115 0.72 -1.7 999,061 + ABIE40_RS05115 0.72 -1.3 999,061 + ABIE40_RS05115 0.72 -1.1 999,061 + ABIE40_RS05115 0.72 +0.6 999,061 + ABIE40_RS05115 0.72 -1.0 999,062 - ABIE40_RS05115 0.72 -0.3 999,062 - ABIE40_RS05115 0.72 +0.2 999,062 - ABIE40_RS05115 0.72 +0.8 999,062 - ABIE40_RS05115 0.72 -0.1 999,062 - ABIE40_RS05115 0.72 -0.2 999,063 + ABIE40_RS05115 0.72 -0.9 999,063 + ABIE40_RS05115 0.72 -0.1 999,063 + ABIE40_RS05115 0.72 -1.1 999,063 + ABIE40_RS05115 0.72 -1.4 999,063 + ABIE40_RS05115 0.72 -0.8 999,063 + ABIE40_RS05115 0.72 +0.3 999,063 + ABIE40_RS05115 0.72 +0.3 999,063 + ABIE40_RS05115 0.72 -0.8 999,063 + ABIE40_RS05115 0.72 +0.7 999,063 + ABIE40_RS05115 0.72 -0.6 999,064 - ABIE40_RS05115 0.72 -0.7 999,064 - ABIE40_RS05115 0.72 -0.1 999,064 - ABIE40_RS05115 0.72 +0.9 999,064 - ABIE40_RS05115 0.72 -0.1 999,064 - ABIE40_RS05115 0.72 -0.4 999,064 - ABIE40_RS05115 0.72 -0.4 999,147 + ABIE40_RS05115 0.81 -0.1 999,225 + ABIE40_RS05115 0.90 -0.5 999,225 + ABIE40_RS05115 0.90 -0.8 999,226 - +1.9 999,349 + -0.7 999,349 + +0.5 999,349 + +0.1 999,349 + +0.1 999,349 + +0.3 999,349 + -2.7 999,349 + -0.1 999,350 - +0.2 999,350 - -1.4 999,506 + -0.0 999,507 - -1.9 999,507 - -0.2 999,507 - -1.4 999,507 - +0.6 999,765 + ABIE40_RS05120 0.15 -0.5 999,765 + ABIE40_RS05120 0.15 -0.1 999,842 + ABIE40_RS05120 0.20 -1.6 999,874 - ABIE40_RS05120 0.22 +0.8 999,886 - ABIE40_RS05120 0.22 -0.1 999,981 + ABIE40_RS05120 0.28 +0.2 999,981 + ABIE40_RS05120 0.28 -1.3 999,982 - ABIE40_RS05120 0.28 -0.0 999,982 - ABIE40_RS05120 0.28 +0.1 999,982 - ABIE40_RS05120 0.28 +1.9 1,000,093 - ABIE40_RS05120 0.34 -0.3 1,000,272 + ABIE40_RS05120 0.45 +0.1 1,000,272 + ABIE40_RS05120 0.45 -0.3 1,000,273 - ABIE40_RS05120 0.45 +0.4 1,000,273 - ABIE40_RS05120 0.45 +0.1 1,000,273 - ABIE40_RS05120 0.45 +0.1 1,000,273 - ABIE40_RS05120 0.45 -0.3 1,000,274 - ABIE40_RS05120 0.45 -1.2
Or see this region's nucleotide sequence