Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS04940

Experiment: Gelatin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS04930 and ABIE40_RS04935 are separated by 98 nucleotidesABIE40_RS04935 and ABIE40_RS04940 are separated by 271 nucleotidesABIE40_RS04940 and ABIE40_RS04945 are separated by 150 nucleotides ABIE40_RS04930: ABIE40_RS04930 - PLP-dependent aminotransferase family protein, at 965,504 to 967,030 _RS04930 ABIE40_RS04935: ABIE40_RS04935 - DUF1236 domain-containing protein, at 967,129 to 967,515 _RS04935 ABIE40_RS04940: ABIE40_RS04940 - hypothetical protein, at 967,787 to 968,020 _RS04940 ABIE40_RS04945: ABIE40_RS04945 - AI-2E family transporter, at 968,171 to 969,337 _RS04945 Position (kb) 967 968 969Strain fitness (log2 ratio) -2 -1 0 1 2at 966.818 kb on + strand, within ABIE40_RS04930at 966.818 kb on + strand, within ABIE40_RS04930at 966.818 kb on + strand, within ABIE40_RS04930at 966.819 kb on - strand, within ABIE40_RS04930at 966.819 kb on - strand, within ABIE40_RS04930at 966.819 kb on - strand, within ABIE40_RS04930at 967.119 kb on + strandat 967.119 kb on + strandat 967.120 kb on - strandat 967.120 kb on - strandat 967.126 kb on + strandat 967.128 kb on - strandat 967.128 kb on - strandat 967.130 kb on + strandat 967.130 kb on + strandat 967.131 kb on - strandat 967.131 kb on - strandat 967.131 kb on - strandat 967.131 kb on - strandat 967.131 kb on - strandat 967.199 kb on + strand, within ABIE40_RS04935at 967.199 kb on + strand, within ABIE40_RS04935at 967.199 kb on + strand, within ABIE40_RS04935at 967.199 kb on + strand, within ABIE40_RS04935at 967.200 kb on - strand, within ABIE40_RS04935at 967.200 kb on - strand, within ABIE40_RS04935at 967.200 kb on - strand, within ABIE40_RS04935at 967.205 kb on + strand, within ABIE40_RS04935at 967.205 kb on + strand, within ABIE40_RS04935at 967.205 kb on + strand, within ABIE40_RS04935at 967.206 kb on - strand, within ABIE40_RS04935at 967.206 kb on - strand, within ABIE40_RS04935at 967.206 kb on - strand, within ABIE40_RS04935at 967.206 kb on - strand, within ABIE40_RS04935at 967.206 kb on - strand, within ABIE40_RS04935at 967.206 kb on - strand, within ABIE40_RS04935at 967.206 kb on - strand, within ABIE40_RS04935at 967.206 kb on - strand, within ABIE40_RS04935at 967.206 kb on - strand, within ABIE40_RS04935at 967.319 kb on + strand, within ABIE40_RS04935at 967.319 kb on + strand, within ABIE40_RS04935at 967.319 kb on + strand, within ABIE40_RS04935at 967.319 kb on + strand, within ABIE40_RS04935at 967.319 kb on + strand, within ABIE40_RS04935at 967.319 kb on + strand, within ABIE40_RS04935at 967.319 kb on + strand, within ABIE40_RS04935at 967.319 kb on + strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.320 kb on - strand, within ABIE40_RS04935at 967.500 kb on + strandat 967.500 kb on + strandat 967.500 kb on + strandat 967.500 kb on + strandat 967.577 kb on - strandat 967.667 kb on + strandat 967.668 kb on - strandat 967.706 kb on + strandat 967.766 kb on + strandat 967.767 kb on - strandat 967.966 kb on + strand, within ABIE40_RS04940at 967.966 kb on + strand, within ABIE40_RS04940at 967.967 kb on - strand, within ABIE40_RS04940at 968.045 kb on + strandat 968.045 kb on + strandat 968.046 kb on - strandat 968.046 kb on - strandat 968.179 kb on - strandat 968.318 kb on - strand, within ABIE40_RS04945at 968.562 kb on + strand, within ABIE40_RS04945at 968.562 kb on + strand, within ABIE40_RS04945at 968.563 kb on - strand, within ABIE40_RS04945at 968.563 kb on - strand, within ABIE40_RS04945at 968.563 kb on - strand, within ABIE40_RS04945at 968.563 kb on - strand, within ABIE40_RS04945at 968.563 kb on - strand, within ABIE40_RS04945at 968.615 kb on + strand, within ABIE40_RS04945at 968.615 kb on + strand, within ABIE40_RS04945at 968.641 kb on + strand, within ABIE40_RS04945at 968.641 kb on + strand, within ABIE40_RS04945at 968.641 kb on + strand, within ABIE40_RS04945at 968.641 kb on + strand, within ABIE40_RS04945at 968.641 kb on + strand, within ABIE40_RS04945at 968.641 kb on + strand, within ABIE40_RS04945at 968.642 kb on - strand, within ABIE40_RS04945at 968.642 kb on - strand, within ABIE40_RS04945at 968.897 kb on + strand, within ABIE40_RS04945at 968.898 kb on - strand, within ABIE40_RS04945at 968.921 kb on + strand, within ABIE40_RS04945at 968.921 kb on + strand, within ABIE40_RS04945at 968.921 kb on + strand, within ABIE40_RS04945at 968.921 kb on + strand, within ABIE40_RS04945at 968.922 kb on - strand, within ABIE40_RS04945at 968.922 kb on - strand, within ABIE40_RS04945at 968.922 kb on - strand, within ABIE40_RS04945

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
remove
966,818 + ABIE40_RS04930 0.86 -1.1
966,818 + ABIE40_RS04930 0.86 -1.9
966,818 + ABIE40_RS04930 0.86 -0.4
966,819 - ABIE40_RS04930 0.86 +1.3
966,819 - ABIE40_RS04930 0.86 -0.6
966,819 - ABIE40_RS04930 0.86 +1.4
967,119 + -1.5
967,119 + -0.1
967,120 - -1.9
967,120 - -1.3
967,126 + -0.6
967,128 - -0.9
967,128 - +1.9
967,130 + -2.4
967,130 + +0.4
967,131 - -0.5
967,131 - -0.7
967,131 - -0.6
967,131 - -1.2
967,131 - -0.9
967,199 + ABIE40_RS04935 0.18 +1.9
967,199 + ABIE40_RS04935 0.18 -0.2
967,199 + ABIE40_RS04935 0.18 -0.5
967,199 + ABIE40_RS04935 0.18 +0.0
967,200 - ABIE40_RS04935 0.18 +2.3
967,200 - ABIE40_RS04935 0.18 +0.7
967,200 - ABIE40_RS04935 0.18 -0.6
967,205 + ABIE40_RS04935 0.20 -0.1
967,205 + ABIE40_RS04935 0.20 -0.7
967,205 + ABIE40_RS04935 0.20 -1.2
967,206 - ABIE40_RS04935 0.20 -0.7
967,206 - ABIE40_RS04935 0.20 -1.2
967,206 - ABIE40_RS04935 0.20 -0.4
967,206 - ABIE40_RS04935 0.20 -0.8
967,206 - ABIE40_RS04935 0.20 -0.3
967,206 - ABIE40_RS04935 0.20 +0.1
967,206 - ABIE40_RS04935 0.20 +0.0
967,206 - ABIE40_RS04935 0.20 -0.6
967,206 - ABIE40_RS04935 0.20 -1.3
967,319 + ABIE40_RS04935 0.49 +0.8
967,319 + ABIE40_RS04935 0.49 +0.1
967,319 + ABIE40_RS04935 0.49 -0.6
967,319 + ABIE40_RS04935 0.49 +0.2
967,319 + ABIE40_RS04935 0.49 +1.1
967,319 + ABIE40_RS04935 0.49 -0.9
967,319 + ABIE40_RS04935 0.49 -0.6
967,319 + ABIE40_RS04935 0.49 -0.1
967,320 - ABIE40_RS04935 0.49 +0.6
967,320 - ABIE40_RS04935 0.49 +0.8
967,320 - ABIE40_RS04935 0.49 -0.4
967,320 - ABIE40_RS04935 0.49 +0.1
967,320 - ABIE40_RS04935 0.49 +0.6
967,320 - ABIE40_RS04935 0.49 +0.0
967,320 - ABIE40_RS04935 0.49 +0.1
967,320 - ABIE40_RS04935 0.49 +0.2
967,320 - ABIE40_RS04935 0.49 +1.5
967,320 - ABIE40_RS04935 0.49 -0.1
967,320 - ABIE40_RS04935 0.49 -2.0
967,320 - ABIE40_RS04935 0.49 -0.1
967,500 + +1.0
967,500 + -0.0
967,500 + -0.3
967,500 + -0.2
967,577 - -1.3
967,667 + -0.0
967,668 - +0.8
967,706 + -0.4
967,766 + -0.3
967,767 - +0.2
967,966 + ABIE40_RS04940 0.76 -0.4
967,966 + ABIE40_RS04940 0.76 -0.1
967,967 - ABIE40_RS04940 0.77 -0.8
968,045 + -1.6
968,045 + +0.6
968,046 - -1.3
968,046 - -0.1
968,179 - +0.1
968,318 - ABIE40_RS04945 0.13 +0.7
968,562 + ABIE40_RS04945 0.34 -0.2
968,562 + ABIE40_RS04945 0.34 -0.3
968,563 - ABIE40_RS04945 0.34 -0.1
968,563 - ABIE40_RS04945 0.34 +0.3
968,563 - ABIE40_RS04945 0.34 -0.3
968,563 - ABIE40_RS04945 0.34 -0.9
968,563 - ABIE40_RS04945 0.34 +0.1
968,615 + ABIE40_RS04945 0.38 +0.3
968,615 + ABIE40_RS04945 0.38 -0.2
968,641 + ABIE40_RS04945 0.40 -0.0
968,641 + ABIE40_RS04945 0.40 +0.1
968,641 + ABIE40_RS04945 0.40 -2.4
968,641 + ABIE40_RS04945 0.40 +0.6
968,641 + ABIE40_RS04945 0.40 +0.8
968,641 + ABIE40_RS04945 0.40 -0.7
968,642 - ABIE40_RS04945 0.40 -1.2
968,642 - ABIE40_RS04945 0.40 -0.6
968,897 + ABIE40_RS04945 0.62 +0.1
968,898 - ABIE40_RS04945 0.62 +1.1
968,921 + ABIE40_RS04945 0.64 -1.4
968,921 + ABIE40_RS04945 0.64 +0.1
968,921 + ABIE40_RS04945 0.64 -0.5
968,921 + ABIE40_RS04945 0.64 -0.9
968,922 - ABIE40_RS04945 0.64 +0.2
968,922 - ABIE40_RS04945 0.64 +1.3
968,922 - ABIE40_RS04945 0.64 -0.1

Or see this region's nucleotide sequence