Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01175

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01170 and ABIE40_RS01175 are separated by 181 nucleotidesABIE40_RS01175 and ABIE40_RS01180 are separated by 0 nucleotidesABIE40_RS01180 and ABIE40_RS01185 overlap by 8 nucleotidesABIE40_RS01185 and ABIE40_RS01190 overlap by 4 nucleotides ABIE40_RS01170: ABIE40_RS01170 - aldo/keto reductase, at 232,474 to 233,421 _RS01170 ABIE40_RS01175: ABIE40_RS01175 - Gfo/Idh/MocA family oxidoreductase, at 233,603 to 234,589 _RS01175 ABIE40_RS01180: ABIE40_RS01180 - GtrA family protein, at 234,590 to 234,982 _RS01180 ABIE40_RS01185: ABIE40_RS01185 - transporter, at 234,975 to 235,352 _RS01185 ABIE40_RS01190: ABIE40_RS01190 - class I SAM-dependent methyltransferase, at 235,349 to 236,053 _RS01190 Position (kb) 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 232.677 kb on + strand, within ABIE40_RS01170at 232.677 kb on + strand, within ABIE40_RS01170at 232.677 kb on + strand, within ABIE40_RS01170at 232.677 kb on + strand, within ABIE40_RS01170at 232.677 kb on + strand, within ABIE40_RS01170at 232.700 kb on + strand, within ABIE40_RS01170at 232.747 kb on - strand, within ABIE40_RS01170at 232.747 kb on - strand, within ABIE40_RS01170at 232.754 kb on + strand, within ABIE40_RS01170at 232.755 kb on - strand, within ABIE40_RS01170at 232.790 kb on + strand, within ABIE40_RS01170at 232.790 kb on + strand, within ABIE40_RS01170at 232.790 kb on + strand, within ABIE40_RS01170at 232.791 kb on - strand, within ABIE40_RS01170at 232.791 kb on - strand, within ABIE40_RS01170at 232.791 kb on - strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.866 kb on + strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.867 kb on - strand, within ABIE40_RS01170at 232.868 kb on + strand, within ABIE40_RS01170at 232.869 kb on - strand, within ABIE40_RS01170at 232.869 kb on - strand, within ABIE40_RS01170at 232.869 kb on - strand, within ABIE40_RS01170at 232.869 kb on - strand, within ABIE40_RS01170at 232.882 kb on + strand, within ABIE40_RS01170at 232.883 kb on - strand, within ABIE40_RS01170at 232.883 kb on - strand, within ABIE40_RS01170at 232.883 kb on - strand, within ABIE40_RS01170at 232.883 kb on - strand, within ABIE40_RS01170at 232.889 kb on + strand, within ABIE40_RS01170at 232.889 kb on + strand, within ABIE40_RS01170at 232.890 kb on - strand, within ABIE40_RS01170at 232.949 kb on + strand, within ABIE40_RS01170at 232.950 kb on - strand, within ABIE40_RS01170at 232.950 kb on - strand, within ABIE40_RS01170at 232.950 kb on - strand, within ABIE40_RS01170at 232.950 kb on - strand, within ABIE40_RS01170at 233.000 kb on + strand, within ABIE40_RS01170at 233.001 kb on - strand, within ABIE40_RS01170at 233.028 kb on + strand, within ABIE40_RS01170at 233.054 kb on + strand, within ABIE40_RS01170at 233.054 kb on + strand, within ABIE40_RS01170at 233.055 kb on - strand, within ABIE40_RS01170at 233.055 kb on - strand, within ABIE40_RS01170at 233.067 kb on - strand, within ABIE40_RS01170at 233.067 kb on - strand, within ABIE40_RS01170at 233.067 kb on - strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.114 kb on + strand, within ABIE40_RS01170at 233.115 kb on - strand, within ABIE40_RS01170at 233.115 kb on - strand, within ABIE40_RS01170at 233.115 kb on - strand, within ABIE40_RS01170at 233.115 kb on - strand, within ABIE40_RS01170at 233.265 kb on - strand, within ABIE40_RS01170at 233.415 kb on + strandat 233.432 kb on + strandat 233.489 kb on + strandat 233.489 kb on + strandat 233.489 kb on + strandat 233.490 kb on - strandat 233.566 kb on + strandat 233.566 kb on + strandat 233.566 kb on + strandat 233.567 kb on - strandat 233.567 kb on - strandat 233.567 kb on - strandat 233.626 kb on + strandat 233.768 kb on + strand, within ABIE40_RS01175at 233.768 kb on + strand, within ABIE40_RS01175at 233.768 kb on + strand, within ABIE40_RS01175at 233.769 kb on - strand, within ABIE40_RS01175at 233.769 kb on - strand, within ABIE40_RS01175at 233.769 kb on - strand, within ABIE40_RS01175at 233.807 kb on + strand, within ABIE40_RS01175at 233.807 kb on + strand, within ABIE40_RS01175at 233.808 kb on - strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.833 kb on + strand, within ABIE40_RS01175at 233.834 kb on - strand, within ABIE40_RS01175at 233.834 kb on - strand, within ABIE40_RS01175at 233.978 kb on + strand, within ABIE40_RS01175at 233.978 kb on + strand, within ABIE40_RS01175at 233.978 kb on + strand, within ABIE40_RS01175at 233.978 kb on + strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 233.979 kb on - strand, within ABIE40_RS01175at 234.062 kb on + strand, within ABIE40_RS01175at 234.062 kb on + strand, within ABIE40_RS01175at 234.063 kb on - strand, within ABIE40_RS01175at 234.063 kb on - strand, within ABIE40_RS01175at 234.063 kb on - strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.230 kb on + strand, within ABIE40_RS01175at 234.231 kb on - strand, within ABIE40_RS01175at 234.231 kb on - strand, within ABIE40_RS01175at 234.275 kb on + strand, within ABIE40_RS01175at 234.275 kb on + strand, within ABIE40_RS01175at 234.275 kb on + strand, within ABIE40_RS01175at 234.276 kb on - strand, within ABIE40_RS01175at 234.276 kb on - strand, within ABIE40_RS01175at 234.711 kb on + strand, within ABIE40_RS01180at 234.712 kb on - strand, within ABIE40_RS01180at 234.712 kb on - strand, within ABIE40_RS01180at 234.712 kb on - strand, within ABIE40_RS01180at 234.720 kb on + strand, within ABIE40_RS01180at 234.720 kb on + strand, within ABIE40_RS01180at 234.720 kb on + strand, within ABIE40_RS01180at 234.739 kb on + strand, within ABIE40_RS01180at 234.739 kb on + strand, within ABIE40_RS01180at 234.740 kb on - strand, within ABIE40_RS01180at 234.778 kb on + strand, within ABIE40_RS01180at 234.778 kb on + strand, within ABIE40_RS01180at 234.778 kb on + strand, within ABIE40_RS01180at 234.779 kb on - strand, within ABIE40_RS01180at 234.779 kb on - strand, within ABIE40_RS01180at 234.779 kb on - strand, within ABIE40_RS01180at 234.944 kb on + strandat 234.945 kb on - strandat 234.945 kb on - strandat 234.995 kb on + strandat 234.995 kb on + strandat 234.996 kb on - strandat 234.996 kb on - strandat 234.996 kb on - strandat 234.996 kb on - strandat 235.027 kb on + strand, within ABIE40_RS01185at 235.027 kb on + strand, within ABIE40_RS01185at 235.027 kb on + strand, within ABIE40_RS01185at 235.028 kb on - strand, within ABIE40_RS01185at 235.105 kb on + strand, within ABIE40_RS01185at 235.106 kb on - strand, within ABIE40_RS01185at 235.115 kb on + strand, within ABIE40_RS01185at 235.116 kb on - strand, within ABIE40_RS01185at 235.116 kb on - strand, within ABIE40_RS01185at 235.116 kb on - strand, within ABIE40_RS01185at 235.138 kb on + strand, within ABIE40_RS01185at 235.139 kb on - strand, within ABIE40_RS01185at 235.139 kb on - strand, within ABIE40_RS01185at 235.166 kb on - strand, within ABIE40_RS01185at 235.212 kb on + strand, within ABIE40_RS01185at 235.212 kb on + strand, within ABIE40_RS01185at 235.212 kb on + strand, within ABIE40_RS01185at 235.213 kb on - strand, within ABIE40_RS01185at 235.360 kb on + strandat 235.360 kb on + strandat 235.360 kb on + strandat 235.360 kb on + strandat 235.361 kb on - strandat 235.361 kb on - strandat 235.394 kb on + strandat 235.394 kb on + strandat 235.394 kb on + strandat 235.394 kb on + strandat 235.394 kb on + strandat 235.394 kb on + strandat 235.394 kb on + strandat 235.395 kb on - strandat 235.395 kb on - strandat 235.395 kb on - strandat 235.395 kb on - strandat 235.395 kb on - strandat 235.396 kb on + strandat 235.410 kb on + strandat 235.421 kb on + strand, within ABIE40_RS01190at 235.453 kb on + strand, within ABIE40_RS01190at 235.453 kb on + strand, within ABIE40_RS01190at 235.454 kb on - strand, within ABIE40_RS01190at 235.454 kb on - strand, within ABIE40_RS01190at 235.454 kb on - strand, within ABIE40_RS01190at 235.454 kb on - strand, within ABIE40_RS01190at 235.454 kb on - strand, within ABIE40_RS01190at 235.455 kb on + strand, within ABIE40_RS01190at 235.455 kb on + strand, within ABIE40_RS01190at 235.488 kb on + strand, within ABIE40_RS01190at 235.489 kb on - strand, within ABIE40_RS01190at 235.540 kb on + strand, within ABIE40_RS01190at 235.586 kb on + strand, within ABIE40_RS01190at 235.586 kb on + strand, within ABIE40_RS01190at 235.586 kb on + strand, within ABIE40_RS01190at 235.587 kb on - strand, within ABIE40_RS01190at 235.587 kb on - strand, within ABIE40_RS01190at 235.587 kb on - strand, within ABIE40_RS01190

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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232,677 + ABIE40_RS01170 0.21 +0.2
232,677 + ABIE40_RS01170 0.21 +0.1
232,677 + ABIE40_RS01170 0.21 -0.6
232,677 + ABIE40_RS01170 0.21 -1.1
232,677 + ABIE40_RS01170 0.21 +0.5
232,700 + ABIE40_RS01170 0.24 -0.4
232,747 - ABIE40_RS01170 0.29 -0.0
232,747 - ABIE40_RS01170 0.29 -0.4
232,754 + ABIE40_RS01170 0.30 -0.1
232,755 - ABIE40_RS01170 0.30 +0.9
232,790 + ABIE40_RS01170 0.33 -0.4
232,790 + ABIE40_RS01170 0.33 -2.2
232,790 + ABIE40_RS01170 0.33 -0.1
232,791 - ABIE40_RS01170 0.33 -0.5
232,791 - ABIE40_RS01170 0.33 -0.1
232,791 - ABIE40_RS01170 0.33 +0.8
232,866 + ABIE40_RS01170 0.41 +1.1
232,866 + ABIE40_RS01170 0.41 +0.7
232,866 + ABIE40_RS01170 0.41 +0.1
232,866 + ABIE40_RS01170 0.41 -0.2
232,866 + ABIE40_RS01170 0.41 -1.0
232,866 + ABIE40_RS01170 0.41 -0.3
232,866 + ABIE40_RS01170 0.41 -0.4
232,866 + ABIE40_RS01170 0.41 +2.0
232,866 + ABIE40_RS01170 0.41 -0.4
232,867 - ABIE40_RS01170 0.41 -0.9
232,867 - ABIE40_RS01170 0.41 +0.4
232,867 - ABIE40_RS01170 0.41 +0.9
232,867 - ABIE40_RS01170 0.41 -0.2
232,867 - ABIE40_RS01170 0.41 +0.5
232,868 + ABIE40_RS01170 0.42 +0.6
232,869 - ABIE40_RS01170 0.42 -1.0
232,869 - ABIE40_RS01170 0.42 +0.2
232,869 - ABIE40_RS01170 0.42 -1.5
232,869 - ABIE40_RS01170 0.42 -1.6
232,882 + ABIE40_RS01170 0.43 +1.7
232,883 - ABIE40_RS01170 0.43 +0.9
232,883 - ABIE40_RS01170 0.43 +0.1
232,883 - ABIE40_RS01170 0.43 -3.6
232,883 - ABIE40_RS01170 0.43 +0.2
232,889 + ABIE40_RS01170 0.44 +0.3
232,889 + ABIE40_RS01170 0.44 -0.3
232,890 - ABIE40_RS01170 0.44 -0.3
232,949 + ABIE40_RS01170 0.50 -1.1
232,950 - ABIE40_RS01170 0.50 -0.3
232,950 - ABIE40_RS01170 0.50 +0.8
232,950 - ABIE40_RS01170 0.50 -0.0
232,950 - ABIE40_RS01170 0.50 -0.6
233,000 + ABIE40_RS01170 0.55 +0.6
233,001 - ABIE40_RS01170 0.56 -0.6
233,028 + ABIE40_RS01170 0.58 +0.1
233,054 + ABIE40_RS01170 0.61 -0.2
233,054 + ABIE40_RS01170 0.61 -2.2
233,055 - ABIE40_RS01170 0.61 +0.4
233,055 - ABIE40_RS01170 0.61 -0.9
233,067 - ABIE40_RS01170 0.63 -0.1
233,067 - ABIE40_RS01170 0.63 -0.0
233,067 - ABIE40_RS01170 0.63 -0.8
233,114 + ABIE40_RS01170 0.68 -0.8
233,114 + ABIE40_RS01170 0.68 -1.1
233,114 + ABIE40_RS01170 0.68 -0.6
233,114 + ABIE40_RS01170 0.68 +0.5
233,114 + ABIE40_RS01170 0.68 +0.4
233,114 + ABIE40_RS01170 0.68 -0.2
233,115 - ABIE40_RS01170 0.68 -0.4
233,115 - ABIE40_RS01170 0.68 -0.6
233,115 - ABIE40_RS01170 0.68 +0.1
233,115 - ABIE40_RS01170 0.68 +1.2
233,265 - ABIE40_RS01170 0.83 +0.0
233,415 + +1.7
233,432 + +0.3
233,489 + -1.5
233,489 + -0.4
233,489 + -0.4
233,490 - +1.1
233,566 + +0.7
233,566 + -1.6
233,566 + -0.6
233,567 - -0.4
233,567 - -0.0
233,567 - -0.4
233,626 + -1.0
233,768 + ABIE40_RS01175 0.17 -1.8
233,768 + ABIE40_RS01175 0.17 -0.0
233,768 + ABIE40_RS01175 0.17 +0.0
233,769 - ABIE40_RS01175 0.17 +2.0
233,769 - ABIE40_RS01175 0.17 +0.8
233,769 - ABIE40_RS01175 0.17 -1.0
233,807 + ABIE40_RS01175 0.21 -1.0
233,807 + ABIE40_RS01175 0.21 -0.8
233,808 - ABIE40_RS01175 0.21 +2.0
233,833 + ABIE40_RS01175 0.23 +0.2
233,833 + ABIE40_RS01175 0.23 -0.0
233,833 + ABIE40_RS01175 0.23 -0.3
233,833 + ABIE40_RS01175 0.23 -1.9
233,833 + ABIE40_RS01175 0.23 +0.9
233,833 + ABIE40_RS01175 0.23 +0.4
233,834 - ABIE40_RS01175 0.23 -2.0
233,834 - ABIE40_RS01175 0.23 -0.0
233,978 + ABIE40_RS01175 0.38 -1.0
233,978 + ABIE40_RS01175 0.38 -0.6
233,978 + ABIE40_RS01175 0.38 +0.1
233,978 + ABIE40_RS01175 0.38 -0.4
233,979 - ABIE40_RS01175 0.38 -2.2
233,979 - ABIE40_RS01175 0.38 -0.2
233,979 - ABIE40_RS01175 0.38 +1.4
233,979 - ABIE40_RS01175 0.38 -0.7
233,979 - ABIE40_RS01175 0.38 +0.6
233,979 - ABIE40_RS01175 0.38 -1.0
234,062 + ABIE40_RS01175 0.47 -0.3
234,062 + ABIE40_RS01175 0.47 -1.0
234,063 - ABIE40_RS01175 0.47 -0.4
234,063 - ABIE40_RS01175 0.47 +0.6
234,063 - ABIE40_RS01175 0.47 -0.4
234,230 + ABIE40_RS01175 0.64 -0.1
234,230 + ABIE40_RS01175 0.64 +0.4
234,230 + ABIE40_RS01175 0.64 -0.9
234,230 + ABIE40_RS01175 0.64 +0.9
234,230 + ABIE40_RS01175 0.64 -0.4
234,231 - ABIE40_RS01175 0.64 -1.8
234,231 - ABIE40_RS01175 0.64 -0.8
234,275 + ABIE40_RS01175 0.68 -0.9
234,275 + ABIE40_RS01175 0.68 +0.0
234,275 + ABIE40_RS01175 0.68 -0.8
234,276 - ABIE40_RS01175 0.68 -1.9
234,276 - ABIE40_RS01175 0.68 -0.0
234,711 + ABIE40_RS01180 0.31 -1.8
234,712 - ABIE40_RS01180 0.31 +0.9
234,712 - ABIE40_RS01180 0.31 -3.1
234,712 - ABIE40_RS01180 0.31 -0.3
234,720 + ABIE40_RS01180 0.33 +0.4
234,720 + ABIE40_RS01180 0.33 +1.3
234,720 + ABIE40_RS01180 0.33 -0.6
234,739 + ABIE40_RS01180 0.38 -0.3
234,739 + ABIE40_RS01180 0.38 +0.0
234,740 - ABIE40_RS01180 0.38 +0.3
234,778 + ABIE40_RS01180 0.48 -0.8
234,778 + ABIE40_RS01180 0.48 -1.5
234,778 + ABIE40_RS01180 0.48 -0.4
234,779 - ABIE40_RS01180 0.48 -0.4
234,779 - ABIE40_RS01180 0.48 +0.1
234,779 - ABIE40_RS01180 0.48 +1.0
234,944 + -2.4
234,945 - +0.2
234,945 - -0.1
234,995 + -0.3
234,995 + +0.1
234,996 - +1.4
234,996 - +0.4
234,996 - +0.5
234,996 - -0.7
235,027 + ABIE40_RS01185 0.14 +0.6
235,027 + ABIE40_RS01185 0.14 +0.2
235,027 + ABIE40_RS01185 0.14 -0.7
235,028 - ABIE40_RS01185 0.14 -0.1
235,105 + ABIE40_RS01185 0.34 +0.6
235,106 - ABIE40_RS01185 0.35 -0.5
235,115 + ABIE40_RS01185 0.37 -0.1
235,116 - ABIE40_RS01185 0.37 -0.5
235,116 - ABIE40_RS01185 0.37 -1.0
235,116 - ABIE40_RS01185 0.37 +0.3
235,138 + ABIE40_RS01185 0.43 -1.0
235,139 - ABIE40_RS01185 0.43 -0.8
235,139 - ABIE40_RS01185 0.43 +0.3
235,166 - ABIE40_RS01185 0.51 -1.4
235,212 + ABIE40_RS01185 0.63 -2.1
235,212 + ABIE40_RS01185 0.63 +1.5
235,212 + ABIE40_RS01185 0.63 -0.4
235,213 - ABIE40_RS01185 0.63 -0.6
235,360 + -0.6
235,360 + -0.6
235,360 + +0.2
235,360 + +0.2
235,361 - +0.1
235,361 - -0.1
235,394 + -0.7
235,394 + +0.6
235,394 + -0.5
235,394 + -0.9
235,394 + +0.9
235,394 + +0.4
235,394 + +0.2
235,395 - -0.4
235,395 - -0.6
235,395 - -1.7
235,395 - -0.1
235,395 - -2.0
235,396 + -0.2
235,410 + +0.6
235,421 + ABIE40_RS01190 0.10 -2.3
235,453 + ABIE40_RS01190 0.15 +0.8
235,453 + ABIE40_RS01190 0.15 -0.5
235,454 - ABIE40_RS01190 0.15 +0.6
235,454 - ABIE40_RS01190 0.15 +1.0
235,454 - ABIE40_RS01190 0.15 -0.1
235,454 - ABIE40_RS01190 0.15 +0.4
235,454 - ABIE40_RS01190 0.15 -0.3
235,455 + ABIE40_RS01190 0.15 +0.0
235,455 + ABIE40_RS01190 0.15 -0.7
235,488 + ABIE40_RS01190 0.20 +0.7
235,489 - ABIE40_RS01190 0.20 -0.5
235,540 + ABIE40_RS01190 0.27 +2.2
235,586 + ABIE40_RS01190 0.34 -1.0
235,586 + ABIE40_RS01190 0.34 +1.6
235,586 + ABIE40_RS01190 0.34 -0.1
235,587 - ABIE40_RS01190 0.34 +0.4
235,587 - ABIE40_RS01190 0.34 -0.1
235,587 - ABIE40_RS01190 0.34 -0.9

Or see this region's nucleotide sequence