Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00150 and ABIE40_RS00155 are separated by 81 nucleotides ABIE40_RS00155 and ABIE40_RS00160 are separated by 230 nucleotides
ABIE40_RS00150: ABIE40_RS00150 - MerR family transcriptional regulator, at 34,891 to 35,700
_RS00150
ABIE40_RS00155: ABIE40_RS00155 - ribonuclease D, at 35,782 to 36,408
_RS00155
ABIE40_RS00160: ABIE40_RS00160 - hypothetical protein, at 36,639 to 38,138
_RS00160
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 34.858 kb on + strand at 34.858 kb on + strand at 34.883 kb on - strand at 34.915 kb on + strand at 34.916 kb on - strand at 34.916 kb on - strand at 34.949 kb on + strand at 34.949 kb on + strand at 34.950 kb on - strand at 34.950 kb on - strand at 34.950 kb on - strand at 35.026 kb on + strand, within ABIE40_RS00150 at 35.026 kb on + strand, within ABIE40_RS00150 at 35.026 kb on + strand, within ABIE40_RS00150 at 35.026 kb on + strand, within ABIE40_RS00150 at 35.027 kb on - strand, within ABIE40_RS00150 at 35.028 kb on + strand, within ABIE40_RS00150 at 35.028 kb on + strand, within ABIE40_RS00150 at 35.029 kb on - strand, within ABIE40_RS00150 at 35.029 kb on - strand, within ABIE40_RS00150 at 35.088 kb on + strand, within ABIE40_RS00150 at 35.088 kb on + strand, within ABIE40_RS00150 at 35.317 kb on + strand, within ABIE40_RS00150 at 35.318 kb on - strand, within ABIE40_RS00150 at 35.318 kb on - strand, within ABIE40_RS00150 at 35.320 kb on + strand, within ABIE40_RS00150 at 35.321 kb on - strand, within ABIE40_RS00150 at 35.321 kb on - strand, within ABIE40_RS00150 at 35.321 kb on - strand, within ABIE40_RS00150 at 35.629 kb on + strand at 35.682 kb on + strand at 35.682 kb on + strand at 35.683 kb on - strand at 35.683 kb on - strand at 35.683 kb on - strand at 35.683 kb on - strand at 35.698 kb on + strand at 35.699 kb on - strand at 35.699 kb on - strand at 35.699 kb on - strand at 35.744 kb on + strand at 35.744 kb on + strand at 35.744 kb on + strand at 35.746 kb on + strand at 35.747 kb on - strand at 35.771 kb on - strand at 35.839 kb on + strand at 35.839 kb on + strand at 35.839 kb on + strand at 35.840 kb on - strand at 35.840 kb on - strand at 35.840 kb on - strand at 35.931 kb on + strand, within ABIE40_RS00155 at 36.025 kb on + strand, within ABIE40_RS00155 at 36.025 kb on + strand, within ABIE40_RS00155 at 36.121 kb on + strand, within ABIE40_RS00155 at 36.121 kb on + strand, within ABIE40_RS00155 at 36.121 kb on + strand, within ABIE40_RS00155 at 36.121 kb on + strand, within ABIE40_RS00155 at 36.121 kb on + strand, within ABIE40_RS00155 at 36.121 kb on + strand, within ABIE40_RS00155 at 36.121 kb on + strand, within ABIE40_RS00155 at 36.122 kb on - strand, within ABIE40_RS00155 at 36.122 kb on - strand, within ABIE40_RS00155 at 36.123 kb on + strand, within ABIE40_RS00155 at 36.123 kb on + strand, within ABIE40_RS00155 at 36.174 kb on + strand, within ABIE40_RS00155 at 36.174 kb on + strand, within ABIE40_RS00155 at 36.174 kb on + strand, within ABIE40_RS00155 at 36.175 kb on - strand, within ABIE40_RS00155 at 36.175 kb on - strand, within ABIE40_RS00155 at 36.259 kb on + strand, within ABIE40_RS00155 at 36.259 kb on + strand, within ABIE40_RS00155 at 36.259 kb on + strand, within ABIE40_RS00155 at 36.259 kb on + strand, within ABIE40_RS00155 at 36.259 kb on + strand, within ABIE40_RS00155 at 36.260 kb on - strand, within ABIE40_RS00155 at 36.260 kb on - strand, within ABIE40_RS00155 at 36.391 kb on - strand at 36.402 kb on + strand at 36.402 kb on + strand at 36.402 kb on + strand at 36.403 kb on - strand at 36.403 kb on - strand at 36.420 kb on + strand at 36.425 kb on - strand at 36.469 kb on - strand at 36.668 kb on + strand at 36.668 kb on + strand at 36.669 kb on - strand at 36.669 kb on - strand at 36.933 kb on - strand, within ABIE40_RS00160 at 37.072 kb on - strand, within ABIE40_RS00160 at 37.089 kb on + strand, within ABIE40_RS00160 at 37.131 kb on + strand, within ABIE40_RS00160 at 37.132 kb on - strand, within ABIE40_RS00160 at 37.181 kb on - strand, within ABIE40_RS00160 at 37.396 kb on + strand, within ABIE40_RS00160 at 37.396 kb on + strand, within ABIE40_RS00160 at 37.397 kb on - strand, within ABIE40_RS00160 at 37.397 kb on - strand, within ABIE40_RS00160 at 37.397 kb on - strand, within ABIE40_RS00160 at 37.407 kb on - strand, within ABIE40_RS00160
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 34,858 + -0.1 34,858 + +0.3 34,883 - -0.1 34,915 + +2.1 34,916 - +1.0 34,916 - -0.5 34,949 + -0.5 34,949 + +0.8 34,950 - +1.0 34,950 - +0.3 34,950 - -0.3 35,026 + ABIE40_RS00150 0.17 -0.3 35,026 + ABIE40_RS00150 0.17 +0.9 35,026 + ABIE40_RS00150 0.17 -3.1 35,026 + ABIE40_RS00150 0.17 +1.0 35,027 - ABIE40_RS00150 0.17 -1.7 35,028 + ABIE40_RS00150 0.17 -1.4 35,028 + ABIE40_RS00150 0.17 -0.8 35,029 - ABIE40_RS00150 0.17 -0.7 35,029 - ABIE40_RS00150 0.17 +0.9 35,088 + ABIE40_RS00150 0.24 +0.8 35,088 + ABIE40_RS00150 0.24 +0.0 35,317 + ABIE40_RS00150 0.53 +0.5 35,318 - ABIE40_RS00150 0.53 -0.1 35,318 - ABIE40_RS00150 0.53 +0.2 35,320 + ABIE40_RS00150 0.53 -1.0 35,321 - ABIE40_RS00150 0.53 +0.3 35,321 - ABIE40_RS00150 0.53 +0.3 35,321 - ABIE40_RS00150 0.53 +0.9 35,629 + -0.4 35,682 + +2.1 35,682 + -2.1 35,683 - -0.4 35,683 - +0.1 35,683 - +3.0 35,683 - -0.0 35,698 + -0.8 35,699 - +0.0 35,699 - +0.2 35,699 - +0.6 35,744 + -0.3 35,744 + -0.2 35,744 + +0.8 35,746 + +0.1 35,747 - +1.7 35,771 - -0.7 35,839 + +2.1 35,839 + +0.1 35,839 + +2.1 35,840 - +0.1 35,840 - +1.6 35,840 - +0.0 35,931 + ABIE40_RS00155 0.24 +0.3 36,025 + ABIE40_RS00155 0.39 -0.2 36,025 + ABIE40_RS00155 0.39 -1.6 36,121 + ABIE40_RS00155 0.54 +0.1 36,121 + ABIE40_RS00155 0.54 -0.7 36,121 + ABIE40_RS00155 0.54 +0.1 36,121 + ABIE40_RS00155 0.54 +0.1 36,121 + ABIE40_RS00155 0.54 +1.1 36,121 + ABIE40_RS00155 0.54 -0.7 36,121 + ABIE40_RS00155 0.54 -0.2 36,122 - ABIE40_RS00155 0.54 +0.3 36,122 - ABIE40_RS00155 0.54 -0.0 36,123 + ABIE40_RS00155 0.54 -0.3 36,123 + ABIE40_RS00155 0.54 +0.3 36,174 + ABIE40_RS00155 0.63 -0.9 36,174 + ABIE40_RS00155 0.63 -3.4 36,174 + ABIE40_RS00155 0.63 -0.1 36,175 - ABIE40_RS00155 0.63 -1.1 36,175 - ABIE40_RS00155 0.63 +0.0 36,259 + ABIE40_RS00155 0.76 +1.0 36,259 + ABIE40_RS00155 0.76 -0.8 36,259 + ABIE40_RS00155 0.76 -0.3 36,259 + ABIE40_RS00155 0.76 -0.4 36,259 + ABIE40_RS00155 0.76 -0.4 36,260 - ABIE40_RS00155 0.76 +2.5 36,260 - ABIE40_RS00155 0.76 -0.3 36,391 - +0.4 36,402 + -0.6 36,402 + -0.6 36,402 + -1.6 36,403 - +0.8 36,403 - -0.2 36,420 + -0.6 36,425 - -1.2 36,469 - -1.2 36,668 + +0.2 36,668 + +0.3 36,669 - +1.1 36,669 - +0.3 36,933 - ABIE40_RS00160 0.20 -2.0 37,072 - ABIE40_RS00160 0.29 -0.0 37,089 + ABIE40_RS00160 0.30 +0.2 37,131 + ABIE40_RS00160 0.33 -1.2 37,132 - ABIE40_RS00160 0.33 +0.2 37,181 - ABIE40_RS00160 0.36 +0.6 37,396 + ABIE40_RS00160 0.50 +1.1 37,396 + ABIE40_RS00160 0.50 +0.1 37,397 - ABIE40_RS00160 0.51 +2.3 37,397 - ABIE40_RS00160 0.51 -0.3 37,397 - ABIE40_RS00160 0.51 +0.1 37,407 - ABIE40_RS00160 0.51 -0.7
Or see this region's nucleotide sequence