Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29045

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29035 and ABID97_RS29040 overlap by 4 nucleotidesABID97_RS29040 and ABID97_RS29045 are separated by 168 nucleotidesABID97_RS29045 and ABID97_RS29050 overlap by 4 nucleotidesABID97_RS29050 and ABID97_RS29055 overlap by 4 nucleotides ABID97_RS29035: ABID97_RS29035 - 3-isopropylmalate dehydrogenase, at 724,963 to 726,042 _RS29035 ABID97_RS29040: ABID97_RS29040 - IclR family transcriptional regulator, at 726,039 to 726,845 _RS29040 ABID97_RS29045: ABID97_RS29045 - tripartite tricarboxylate transporter substrate binding protein, at 727,014 to 728,030 _RS29045 ABID97_RS29050: ABID97_RS29050 - enoyl-CoA hydratase/isomerase family protein, at 728,027 to 728,833 _RS29050 ABID97_RS29055: ABID97_RS29055 - acetate--CoA ligase family protein, at 728,830 to 730,926 _RS29055 Position (kb) 727 728 729Strain fitness (log2 ratio) -2 -1 0 1at 726.040 kb on + strandat 726.463 kb on + strand, within ABID97_RS29040at 726.464 kb on - strand, within ABID97_RS29040at 726.933 kb on + strandat 726.940 kb on + strandat 727.296 kb on + strand, within ABID97_RS29045at 727.297 kb on - strand, within ABID97_RS29045at 727.360 kb on - strand, within ABID97_RS29045at 727.776 kb on + strand, within ABID97_RS29045at 727.804 kb on - strand, within ABID97_RS29045at 727.804 kb on - strand, within ABID97_RS29045at 727.948 kb on - strandat 728.163 kb on - strand, within ABID97_RS29050at 728.163 kb on - strand, within ABID97_RS29050at 728.447 kb on + strand, within ABID97_RS29050

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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726,040 + -0.1
726,463 + ABID97_RS29040 0.53 +0.4
726,464 - ABID97_RS29040 0.53 +0.3
726,933 + -0.5
726,940 + -0.4
727,296 + ABID97_RS29045 0.28 -0.7
727,297 - ABID97_RS29045 0.28 +0.0
727,360 - ABID97_RS29045 0.34 +0.3
727,776 + ABID97_RS29045 0.75 +0.5
727,804 - ABID97_RS29045 0.78 -1.0
727,804 - ABID97_RS29045 0.78 -0.7
727,948 - -0.2
728,163 - ABID97_RS29050 0.17 -1.8
728,163 - ABID97_RS29050 0.17 -0.5
728,447 + ABID97_RS29050 0.52 -0.1

Or see this region's nucleotide sequence