Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28625 and ABID97_RS28630 are separated by 37 nucleotides ABID97_RS28630 and ABID97_RS28635 are separated by 244 nucleotides ABID97_RS28635 and ABID97_RS28640 overlap by 4 nucleotides
ABID97_RS28625: ABID97_RS28625 - MaoC family dehydratase N-terminal domain-containing protein, at 644,305 to 645,447
_RS28625
ABID97_RS28630: ABID97_RS28630 - AMP-binding protein, at 645,485 to 647,041
_RS28630
ABID97_RS28635: ABID97_RS28635 - IclR family transcriptional regulator, at 647,286 to 648,008
_RS28635
ABID97_RS28640: ABID97_RS28640 - PaaI family thioesterase, at 648,005 to 648,445
_RS28640
Position (kb) 645
646
647
648 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 644.712 kb on - strand, within ABID97_RS28625 at 645.021 kb on - strand, within ABID97_RS28625 at 645.021 kb on - strand, within ABID97_RS28625 at 645.081 kb on - strand, within ABID97_RS28625 at 645.305 kb on + strand, within ABID97_RS28625 at 645.335 kb on + strand at 645.837 kb on + strand, within ABID97_RS28630 at 646.060 kb on - strand, within ABID97_RS28630 at 646.155 kb on + strand, within ABID97_RS28630 at 646.399 kb on - strand, within ABID97_RS28630 at 646.483 kb on - strand, within ABID97_RS28630 at 646.743 kb on + strand, within ABID97_RS28630 at 646.743 kb on + strand, within ABID97_RS28630 at 647.165 kb on + strand at 647.198 kb on - strand at 647.652 kb on + strand, within ABID97_RS28635 at 647.653 kb on - strand, within ABID97_RS28635 at 647.850 kb on + strand, within ABID97_RS28635
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 644,712 - ABID97_RS28625 0.36 -0.5 645,021 - ABID97_RS28625 0.63 -0.8 645,021 - ABID97_RS28625 0.63 -1.4 645,081 - ABID97_RS28625 0.68 -0.2 645,305 + ABID97_RS28625 0.87 +0.2 645,335 + -0.2 645,837 + ABID97_RS28630 0.23 +0.1 646,060 - ABID97_RS28630 0.37 -0.5 646,155 + ABID97_RS28630 0.43 +1.1 646,399 - ABID97_RS28630 0.59 +0.3 646,483 - ABID97_RS28630 0.64 -0.8 646,743 + ABID97_RS28630 0.81 -0.8 646,743 + ABID97_RS28630 0.81 -0.4 647,165 + -0.5 647,198 - -0.1 647,652 + ABID97_RS28635 0.51 -2.0 647,653 - ABID97_RS28635 0.51 -2.8 647,850 + ABID97_RS28635 0.78 -3.3
Or see this region's nucleotide sequence