Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28285 and ABID97_RS28290 are separated by 104 nucleotides ABID97_RS28290 and ABID97_RS28295 are separated by 150 nucleotides ABID97_RS28295 and ABID97_RS28300 are separated by 176 nucleotides
ABID97_RS28285: ABID97_RS28285 - hypothetical protein, at 576,936 to 577,292
_RS28285
ABID97_RS28290: ABID97_RS28290 - hypothetical protein, at 577,397 to 577,696
_RS28290
ABID97_RS28295: ABID97_RS28295 - tRNA-uridine aminocarboxypropyltransferase, at 577,847 to 578,606
_RS28295
ABID97_RS28300: ABID97_RS28300 - acyl-CoA dehydrogenase, at 578,783 to 580,573
_RS28300
Position (kb) 577
578
579 Strain fitness (log2 ratio) -2
-1
0
1 at 577.000 kb on + strand, within ABID97_RS28285 at 577.001 kb on - strand, within ABID97_RS28285 at 577.128 kb on + strand, within ABID97_RS28285 at 577.220 kb on + strand, within ABID97_RS28285 at 577.410 kb on - strand at 577.520 kb on - strand, within ABID97_RS28290 at 578.187 kb on + strand, within ABID97_RS28295 at 578.188 kb on - strand, within ABID97_RS28295 at 578.377 kb on - strand, within ABID97_RS28295 at 578.484 kb on + strand, within ABID97_RS28295 at 578.509 kb on - strand, within ABID97_RS28295 at 578.509 kb on - strand, within ABID97_RS28295 at 578.787 kb on + strand at 578.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 577,000 + ABID97_RS28285 0.18 -0.1 577,001 - ABID97_RS28285 0.18 +0.1 577,128 + ABID97_RS28285 0.54 -0.3 577,220 + ABID97_RS28285 0.80 -0.5 577,410 - +0.1 577,520 - ABID97_RS28290 0.41 -1.4 578,187 + ABID97_RS28295 0.45 -0.3 578,188 - ABID97_RS28295 0.45 -1.2 578,377 - ABID97_RS28295 0.70 -0.3 578,484 + ABID97_RS28295 0.84 -0.9 578,509 - ABID97_RS28295 0.87 -2.1 578,509 - ABID97_RS28295 0.87 -1.1 578,787 + +1.2 578,788 - -0.2
Or see this region's nucleotide sequence