Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28105 and ABID97_RS28110 are separated by 200 nucleotides ABID97_RS28110 and ABID97_RS28115 overlap by 36 nucleotides ABID97_RS28115 and ABID97_RS28120 are separated by 206 nucleotides
ABID97_RS28105: ABID97_RS28105 - SdrD B-like domain-containing protein, at 537,468 to 539,558
_RS28105
ABID97_RS28110: ABID97_RS28110 - hypothetical protein, at 539,759 to 540,025
_RS28110
ABID97_RS28115: ABID97_RS28115 - ATP-binding protein, at 539,990 to 541,990
_RS28115
ABID97_RS28120: ABID97_RS28120 - hypothetical protein, at 542,197 to 543,318
_RS28120
Position (kb) 539
540
541
542 Strain fitness (log2 ratio) -1
0
1 at 539.509 kb on - strand at 539.509 kb on - strand at 539.599 kb on + strand at 539.621 kb on + strand at 539.621 kb on + strand at 539.622 kb on - strand at 539.704 kb on + strand at 540.750 kb on + strand, within ABID97_RS28115 at 540.768 kb on + strand, within ABID97_RS28115 at 540.769 kb on - strand, within ABID97_RS28115 at 540.802 kb on - strand, within ABID97_RS28115 at 540.814 kb on - strand, within ABID97_RS28115 at 540.814 kb on - strand, within ABID97_RS28115 at 540.814 kb on - strand, within ABID97_RS28115 at 540.858 kb on + strand, within ABID97_RS28115 at 541.006 kb on - strand, within ABID97_RS28115 at 541.006 kb on - strand, within ABID97_RS28115 at 541.212 kb on + strand, within ABID97_RS28115 at 541.212 kb on + strand, within ABID97_RS28115 at 541.264 kb on - strand, within ABID97_RS28115 at 541.729 kb on + strand, within ABID97_RS28115 at 542.091 kb on + strand at 542.092 kb on - strand at 542.092 kb on - strand at 542.185 kb on + strand at 542.809 kb on + strand, within ABID97_RS28120 at 542.809 kb on + strand, within ABID97_RS28120 at 542.809 kb on + strand, within ABID97_RS28120 at 542.810 kb on - strand, within ABID97_RS28120 at 542.810 kb on - strand, within ABID97_RS28120 at 542.815 kb on + strand, within ABID97_RS28120 at 542.816 kb on - strand, within ABID97_RS28120
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 539,509 - +0.1 539,509 - +0.5 539,599 + +0.1 539,621 + +0.8 539,621 + -0.8 539,622 - -0.9 539,704 + +0.7 540,750 + ABID97_RS28115 0.38 +0.9 540,768 + ABID97_RS28115 0.39 +0.1 540,769 - ABID97_RS28115 0.39 +0.6 540,802 - ABID97_RS28115 0.41 +0.7 540,814 - ABID97_RS28115 0.41 +0.4 540,814 - ABID97_RS28115 0.41 +0.3 540,814 - ABID97_RS28115 0.41 -0.6 540,858 + ABID97_RS28115 0.43 -0.3 541,006 - ABID97_RS28115 0.51 +1.2 541,006 - ABID97_RS28115 0.51 -0.3 541,212 + ABID97_RS28115 0.61 +0.4 541,212 + ABID97_RS28115 0.61 -0.5 541,264 - ABID97_RS28115 0.64 -0.2 541,729 + ABID97_RS28115 0.87 -0.3 542,091 + +0.4 542,092 - -0.0 542,092 - -0.2 542,185 + +0.5 542,809 + ABID97_RS28120 0.55 +0.8 542,809 + ABID97_RS28120 0.55 -0.7 542,809 + ABID97_RS28120 0.55 -0.5 542,810 - ABID97_RS28120 0.55 +0.5 542,810 - ABID97_RS28120 0.55 +0.2 542,815 + ABID97_RS28120 0.55 +0.7 542,816 - ABID97_RS28120 0.55 +0.1
Or see this region's nucleotide sequence