Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27925

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27920 and ABID97_RS27925 overlap by 4 nucleotidesABID97_RS27925 and ABID97_RS27930 overlap by 4 nucleotidesABID97_RS27930 and ABID97_RS27935 are separated by 3 nucleotidesABID97_RS27935 and ABID97_RS27940 overlap by 4 nucleotides ABID97_RS27920: ABID97_RS27920 - 4-hydroxy-2-oxovalerate aldolase, at 503,816 to 504,856 _RS27920 ABID97_RS27925: ABID97_RS27925 - acetaldehyde dehydrogenase (acetylating), at 504,853 to 505,812 _RS27925 ABID97_RS27930: ABID97_RS27930 - hypothetical protein, at 505,809 to 505,949 _RS27930 ABID97_RS27935: ABID97_RS27935 - fumarylacetoacetate hydrolase family protein, at 505,953 to 506,720 _RS27935 ABID97_RS27940: ABID97_RS27940 - 2-keto-4-pentenoate hydratase, at 506,717 to 507,529 _RS27940 Position (kb) 504 505 506Strain fitness (log2 ratio) -1 0 1at 503.950 kb on - strand, within ABID97_RS27920at 503.950 kb on - strand, within ABID97_RS27920at 503.992 kb on - strand, within ABID97_RS27920at 504.091 kb on - strand, within ABID97_RS27920at 504.363 kb on + strand, within ABID97_RS27920at 504.783 kb on + strandat 505.488 kb on - strand, within ABID97_RS27925at 506.009 kb on - strandat 506.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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503,950 - ABID97_RS27920 0.13 -0.7
503,950 - ABID97_RS27920 0.13 +0.4
503,992 - ABID97_RS27920 0.17 -0.5
504,091 - ABID97_RS27920 0.26 +0.2
504,363 + ABID97_RS27920 0.53 +0.4
504,783 + +1.4
505,488 - ABID97_RS27925 0.66 +0.2
506,009 - -0.2
506,009 - +0.4

Or see this region's nucleotide sequence