Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22850

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS22840 and ABID97_RS22845 overlap by 4 nucleotidesABID97_RS22845 and ABID97_RS22850 are separated by 27 nucleotidesABID97_RS22850 and ABID97_RS22855 overlap by 4 nucleotides ABID97_RS22840: ABID97_RS22840 - isoprenylcysteine carboxylmethyltransferase family protein, at 4,729,786 to 4,730,346 _RS22840 ABID97_RS22845: ABID97_RS22845 - CPBP family intramembrane glutamic endopeptidase, at 4,730,343 to 4,731,137 _RS22845 ABID97_RS22850: ABID97_RS22850 - flavin reductase family protein, at 4,731,165 to 4,731,767 _RS22850 ABID97_RS22855: ABID97_RS22855 - D-aminoacylase, at 4,731,764 to 4,733,251 _RS22855 Position (kb) 4731 4732Strain fitness (log2 ratio) -2 -1 0 1 2at 4730.305 kb on + strandat 4730.530 kb on - strand, within ABID97_RS22845at 4730.544 kb on + strand, within ABID97_RS22845at 4730.820 kb on + strand, within ABID97_RS22845at 4730.883 kb on + strand, within ABID97_RS22845at 4730.884 kb on - strand, within ABID97_RS22845at 4730.884 kb on - strand, within ABID97_RS22845at 4731.445 kb on + strand, within ABID97_RS22850at 4731.446 kb on - strand, within ABID97_RS22850at 4731.446 kb on - strand, within ABID97_RS22850at 4731.724 kb on + strandat 4731.779 kb on - strandat 4732.206 kb on + strand, within ABID97_RS22855at 4732.207 kb on - strand, within ABID97_RS22855at 4732.390 kb on - strand, within ABID97_RS22855at 4732.587 kb on + strand, within ABID97_RS22855at 4732.588 kb on - strand, within ABID97_RS22855at 4732.663 kb on - strand, within ABID97_RS22855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
4,730,305 + +0.3
4,730,530 - ABID97_RS22845 0.24 -1.5
4,730,544 + ABID97_RS22845 0.25 +1.4
4,730,820 + ABID97_RS22845 0.60 -1.2
4,730,883 + ABID97_RS22845 0.68 +0.0
4,730,884 - ABID97_RS22845 0.68 +0.2
4,730,884 - ABID97_RS22845 0.68 +1.8
4,731,445 + ABID97_RS22850 0.46 -1.8
4,731,446 - ABID97_RS22850 0.47 +1.0
4,731,446 - ABID97_RS22850 0.47 -0.8
4,731,724 + -0.3
4,731,779 - +1.0
4,732,206 + ABID97_RS22855 0.30 -0.2
4,732,207 - ABID97_RS22855 0.30 +0.1
4,732,390 - ABID97_RS22855 0.42 -1.1
4,732,587 + ABID97_RS22855 0.55 -0.4
4,732,588 - ABID97_RS22855 0.55 +0.1
4,732,663 - ABID97_RS22855 0.60 -1.2

Or see this region's nucleotide sequence