Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22290 and ABID97_RS22295 are separated by 162 nucleotides ABID97_RS22295 and ABID97_RS22300 are separated by 11 nucleotides
ABID97_RS22290: ABID97_RS22290 - AI-2E family transporter, at 4,618,538 to 4,619,620
_RS22290
ABID97_RS22295: ABID97_RS22295 - DUF2141 domain-containing protein, at 4,619,783 to 4,620,214
_RS22295
ABID97_RS22300: ABID97_RS22300 - carotenoid oxygenase family protein, at 4,620,226 to 4,621,722
_RS22300
Position (kb)
4619
4620
4621 Strain fitness (log2 ratio)
-1
0
1 at 4618.850 kb on + strand, within ABID97_RS22290 at 4618.850 kb on + strand, within ABID97_RS22290 at 4619.045 kb on + strand, within ABID97_RS22290 at 4619.046 kb on - strand, within ABID97_RS22290 at 4619.055 kb on - strand, within ABID97_RS22290 at 4619.132 kb on + strand, within ABID97_RS22290 at 4619.333 kb on + strand, within ABID97_RS22290 at 4619.333 kb on + strand, within ABID97_RS22290 at 4619.333 kb on + strand, within ABID97_RS22290 at 4619.333 kb on + strand, within ABID97_RS22290 at 4619.334 kb on - strand, within ABID97_RS22290 at 4619.334 kb on - strand, within ABID97_RS22290 at 4619.334 kb on - strand, within ABID97_RS22290 at 4619.334 kb on - strand, within ABID97_RS22290 at 4619.337 kb on - strand, within ABID97_RS22290 at 4619.912 kb on + strand, within ABID97_RS22295 at 4619.924 kb on + strand, within ABID97_RS22295 at 4619.925 kb on - strand, within ABID97_RS22295 at 4619.925 kb on - strand, within ABID97_RS22295 at 4620.484 kb on + strand, within ABID97_RS22300 at 4620.759 kb on + strand, within ABID97_RS22300 at 4620.759 kb on + strand, within ABID97_RS22300 at 4620.759 kb on + strand, within ABID97_RS22300 at 4620.760 kb on - strand, within ABID97_RS22300 at 4620.760 kb on - strand, within ABID97_RS22300 at 4620.760 kb on - strand, within ABID97_RS22300
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,618,850 + ABID97_RS22290 0.29 -0.8 4,618,850 + ABID97_RS22290 0.29 +0.3 4,619,045 + ABID97_RS22290 0.47 -1.0 4,619,046 - ABID97_RS22290 0.47 -0.0 4,619,055 - ABID97_RS22290 0.48 -0.3 4,619,132 + ABID97_RS22290 0.55 -0.1 4,619,333 + ABID97_RS22290 0.73 +0.9 4,619,333 + ABID97_RS22290 0.73 +0.0 4,619,333 + ABID97_RS22290 0.73 -1.6 4,619,333 + ABID97_RS22290 0.73 -0.1 4,619,334 - ABID97_RS22290 0.73 +0.2 4,619,334 - ABID97_RS22290 0.73 -0.5 4,619,334 - ABID97_RS22290 0.73 -0.4 4,619,334 - ABID97_RS22290 0.73 +0.9 4,619,337 - ABID97_RS22290 0.74 -1.2 4,619,912 + ABID97_RS22295 0.30 +0.4 4,619,924 + ABID97_RS22295 0.33 -0.6 4,619,925 - ABID97_RS22295 0.33 +0.1 4,619,925 - ABID97_RS22295 0.33 +0.5 4,620,484 + ABID97_RS22300 0.17 +0.1 4,620,759 + ABID97_RS22300 0.36 -0.1 4,620,759 + ABID97_RS22300 0.36 +0.4 4,620,759 + ABID97_RS22300 0.36 +0.5 4,620,760 - ABID97_RS22300 0.36 -0.0 4,620,760 - ABID97_RS22300 0.36 -0.1 4,620,760 - ABID97_RS22300 0.36 -0.9
Or see this region's nucleotide sequence