Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20570

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20565 and ABID97_RS20570 are separated by 55 nucleotidesABID97_RS20570 and ABID97_RS20575 are separated by 141 nucleotides ABID97_RS20565: ABID97_RS20565 - nitrate ABC transporter permease, at 4,244,941 to 4,245,873 _RS20565 ABID97_RS20570: ABID97_RS20570 - ABC transporter ATP-binding protein, at 4,245,929 to 4,246,738 _RS20570 ABID97_RS20575: ABID97_RS20575 - type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein, at 4,246,880 to 4,248,169 _RS20575 Position (kb) 4245 4246 4247Strain fitness (log2 ratio) -1 0 1at 4245.562 kb on + strand, within ABID97_RS20565at 4245.640 kb on + strand, within ABID97_RS20565at 4245.947 kb on + strandat 4245.948 kb on - strandat 4246.179 kb on + strand, within ABID97_RS20570at 4246.179 kb on + strand, within ABID97_RS20570at 4246.233 kb on - strand, within ABID97_RS20570

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,245,562 + ABID97_RS20565 0.67 -0.3
4,245,640 + ABID97_RS20565 0.75 +0.3
4,245,947 + -0.7
4,245,948 - -0.2
4,246,179 + ABID97_RS20570 0.31 -0.5
4,246,179 + ABID97_RS20570 0.31 -0.4
4,246,233 - ABID97_RS20570 0.38 -0.7

Or see this region's nucleotide sequence