Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19670

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19665 and ABID97_RS19670 are separated by 127 nucleotidesABID97_RS19670 and ABID97_RS19675 are separated by 7 nucleotides ABID97_RS19665: ABID97_RS19665 - DUF3014 domain-containing protein, at 4,062,317 to 4,063,261 _RS19665 ABID97_RS19670: ABID97_RS19670 - phospholipase, at 4,063,389 to 4,064,072 _RS19670 ABID97_RS19675: ABID97_RS19675 - nitronate monooxygenase, at 4,064,080 to 4,065,138 _RS19675 Position (kb) 4063 4064 4065Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4062.628 kb on - strand, within ABID97_RS19665at 4062.660 kb on + strand, within ABID97_RS19665at 4062.661 kb on - strand, within ABID97_RS19665at 4062.717 kb on + strand, within ABID97_RS19665at 4062.718 kb on - strand, within ABID97_RS19665at 4062.772 kb on + strand, within ABID97_RS19665at 4062.773 kb on - strand, within ABID97_RS19665at 4063.113 kb on + strand, within ABID97_RS19665at 4063.127 kb on + strand, within ABID97_RS19665at 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.308 kb on - strandat 4063.308 kb on - strandat 4063.308 kb on - strandat 4063.308 kb on - strandat 4063.401 kb on - strandat 4063.873 kb on + strand, within ABID97_RS19670at 4063.894 kb on + strand, within ABID97_RS19670at 4063.895 kb on - strand, within ABID97_RS19670at 4063.895 kb on - strand, within ABID97_RS19670at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.418 kb on - strand, within ABID97_RS19675at 4064.418 kb on - strand, within ABID97_RS19675at 4064.859 kb on - strand, within ABID97_RS19675at 4064.861 kb on + strand, within ABID97_RS19675at 4064.862 kb on - strand, within ABID97_RS19675at 4064.942 kb on + strand, within ABID97_RS19675at 4064.943 kb on - strand, within ABID97_RS19675

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,062,628 - ABID97_RS19665 0.33 -0.1
4,062,660 + ABID97_RS19665 0.36 +0.0
4,062,661 - ABID97_RS19665 0.36 -0.6
4,062,717 + ABID97_RS19665 0.42 +0.5
4,062,718 - ABID97_RS19665 0.42 -1.1
4,062,772 + ABID97_RS19665 0.48 -0.5
4,062,773 - ABID97_RS19665 0.48 +2.9
4,063,113 + ABID97_RS19665 0.84 -0.5
4,063,127 + ABID97_RS19665 0.86 -1.2
4,063,307 + +1.0
4,063,307 + +0.1
4,063,307 + +0.1
4,063,307 + +0.0
4,063,307 + +1.0
4,063,307 + -0.4
4,063,308 - +1.5
4,063,308 - +0.2
4,063,308 - -0.5
4,063,308 - -0.2
4,063,401 - +0.9
4,063,873 + ABID97_RS19670 0.71 +0.4
4,063,894 + ABID97_RS19670 0.74 -0.6
4,063,895 - ABID97_RS19670 0.74 +0.4
4,063,895 - ABID97_RS19670 0.74 -0.6
4,064,417 + ABID97_RS19675 0.32 +0.3
4,064,417 + ABID97_RS19675 0.32 -0.4
4,064,417 + ABID97_RS19675 0.32 -0.9
4,064,417 + ABID97_RS19675 0.32 -1.1
4,064,417 + ABID97_RS19675 0.32 +1.9
4,064,417 + ABID97_RS19675 0.32 -0.7
4,064,418 - ABID97_RS19675 0.32 -2.7
4,064,418 - ABID97_RS19675 0.32 -1.4
4,064,859 - ABID97_RS19675 0.74 -0.1
4,064,861 + ABID97_RS19675 0.74 +0.2
4,064,862 - ABID97_RS19675 0.74 -0.8
4,064,942 + ABID97_RS19675 0.81 -0.9
4,064,943 - ABID97_RS19675 0.81 -1.8

Or see this region's nucleotide sequence