Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19240 and ABID97_RS19245 are separated by 170 nucleotides ABID97_RS19245 and ABID97_RS19250 are separated by 17 nucleotides ABID97_RS19250 and ABID97_RS19255 are separated by 92 nucleotides
ABID97_RS19240: ABID97_RS19240 - ABC transporter substrate-binding protein, at 3,971,240 to 3,972,364
_RS19240
ABID97_RS19245: ABID97_RS19245 - aldo/keto reductase, at 3,972,535 to 3,973,371
_RS19245
ABID97_RS19250: ABID97_RS19250 - alpha/beta fold hydrolase, at 3,973,389 to 3,974,264
_RS19250
ABID97_RS19255: ABID97_RS19255 - class III extradiol ring-cleavage dioxygenase, at 3,974,357 to 3,975,175
_RS19255
Position (kb)
3972
3973
3974 Strain fitness (log2 ratio)
-1
0
1
2 at 3971.618 kb on + strand, within ABID97_RS19240 at 3971.655 kb on - strand, within ABID97_RS19240 at 3971.678 kb on + strand, within ABID97_RS19240 at 3971.678 kb on + strand, within ABID97_RS19240 at 3971.679 kb on - strand, within ABID97_RS19240 at 3971.679 kb on - strand, within ABID97_RS19240 at 3971.690 kb on + strand, within ABID97_RS19240 at 3971.691 kb on - strand, within ABID97_RS19240 at 3971.691 kb on - strand, within ABID97_RS19240 at 3971.691 kb on - strand, within ABID97_RS19240 at 3971.952 kb on - strand at 3971.982 kb on - strand, within ABID97_RS19240 at 3972.141 kb on - strand, within ABID97_RS19240 at 3972.141 kb on - strand, within ABID97_RS19240 at 3972.146 kb on + strand, within ABID97_RS19240 at 3972.147 kb on - strand, within ABID97_RS19240 at 3972.147 kb on - strand, within ABID97_RS19240 at 3972.164 kb on + strand, within ABID97_RS19240 at 3972.353 kb on + strand at 3972.638 kb on - strand, within ABID97_RS19245 at 3972.638 kb on - strand, within ABID97_RS19245 at 3972.638 kb on - strand, within ABID97_RS19245 at 3972.710 kb on - strand, within ABID97_RS19245 at 3972.952 kb on + strand, within ABID97_RS19245 at 3972.952 kb on + strand, within ABID97_RS19245 at 3972.952 kb on + strand, within ABID97_RS19245 at 3972.970 kb on + strand, within ABID97_RS19245 at 3972.971 kb on - strand, within ABID97_RS19245 at 3973.043 kb on - strand, within ABID97_RS19245
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,971,618 + ABID97_RS19240 0.34 -0.3 3,971,655 - ABID97_RS19240 0.37 +0.8 3,971,678 + ABID97_RS19240 0.39 +0.6 3,971,678 + ABID97_RS19240 0.39 +1.4 3,971,679 - ABID97_RS19240 0.39 +0.0 3,971,679 - ABID97_RS19240 0.39 -0.6 3,971,690 + ABID97_RS19240 0.40 -0.5 3,971,691 - ABID97_RS19240 0.40 +0.2 3,971,691 - ABID97_RS19240 0.40 +1.1 3,971,691 - ABID97_RS19240 0.40 +1.3 3,971,952 - +2.0 3,971,982 - ABID97_RS19240 0.66 -0.9 3,972,141 - ABID97_RS19240 0.80 +0.4 3,972,141 - ABID97_RS19240 0.80 +0.2 3,972,146 + ABID97_RS19240 0.81 +0.0 3,972,147 - ABID97_RS19240 0.81 +0.0 3,972,147 - ABID97_RS19240 0.81 +0.4 3,972,164 + ABID97_RS19240 0.82 +1.1 3,972,353 + +0.4 3,972,638 - ABID97_RS19245 0.12 +0.5 3,972,638 - ABID97_RS19245 0.12 -0.4 3,972,638 - ABID97_RS19245 0.12 +0.7 3,972,710 - ABID97_RS19245 0.21 +0.0 3,972,952 + ABID97_RS19245 0.50 +0.9 3,972,952 + ABID97_RS19245 0.50 +0.0 3,972,952 + ABID97_RS19245 0.50 -1.3 3,972,970 + ABID97_RS19245 0.52 -0.3 3,972,971 - ABID97_RS19245 0.52 +0.8 3,973,043 - ABID97_RS19245 0.61 +0.3
Or see this region's nucleotide sequence