Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19245

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS19240 and ABID97_RS19245 are separated by 170 nucleotidesABID97_RS19245 and ABID97_RS19250 are separated by 17 nucleotidesABID97_RS19250 and ABID97_RS19255 are separated by 92 nucleotides ABID97_RS19240: ABID97_RS19240 - ABC transporter substrate-binding protein, at 3,971,240 to 3,972,364 _RS19240 ABID97_RS19245: ABID97_RS19245 - aldo/keto reductase, at 3,972,535 to 3,973,371 _RS19245 ABID97_RS19250: ABID97_RS19250 - alpha/beta fold hydrolase, at 3,973,389 to 3,974,264 _RS19250 ABID97_RS19255: ABID97_RS19255 - class III extradiol ring-cleavage dioxygenase, at 3,974,357 to 3,975,175 _RS19255 Position (kb) 3972 3973 3974Strain fitness (log2 ratio) -1 0 1 2at 3971.618 kb on + strand, within ABID97_RS19240at 3971.655 kb on - strand, within ABID97_RS19240at 3971.678 kb on + strand, within ABID97_RS19240at 3971.678 kb on + strand, within ABID97_RS19240at 3971.679 kb on - strand, within ABID97_RS19240at 3971.679 kb on - strand, within ABID97_RS19240at 3971.690 kb on + strand, within ABID97_RS19240at 3971.691 kb on - strand, within ABID97_RS19240at 3971.691 kb on - strand, within ABID97_RS19240at 3971.691 kb on - strand, within ABID97_RS19240at 3971.952 kb on - strandat 3971.982 kb on - strand, within ABID97_RS19240at 3972.141 kb on - strand, within ABID97_RS19240at 3972.141 kb on - strand, within ABID97_RS19240at 3972.146 kb on + strand, within ABID97_RS19240at 3972.147 kb on - strand, within ABID97_RS19240at 3972.147 kb on - strand, within ABID97_RS19240at 3972.164 kb on + strand, within ABID97_RS19240at 3972.353 kb on + strandat 3972.638 kb on - strand, within ABID97_RS19245at 3972.638 kb on - strand, within ABID97_RS19245at 3972.638 kb on - strand, within ABID97_RS19245at 3972.710 kb on - strand, within ABID97_RS19245at 3972.952 kb on + strand, within ABID97_RS19245at 3972.952 kb on + strand, within ABID97_RS19245at 3972.952 kb on + strand, within ABID97_RS19245at 3972.970 kb on + strand, within ABID97_RS19245at 3972.971 kb on - strand, within ABID97_RS19245at 3973.043 kb on - strand, within ABID97_RS19245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
3,971,618 + ABID97_RS19240 0.34 -0.3
3,971,655 - ABID97_RS19240 0.37 +0.8
3,971,678 + ABID97_RS19240 0.39 +0.6
3,971,678 + ABID97_RS19240 0.39 +1.4
3,971,679 - ABID97_RS19240 0.39 +0.0
3,971,679 - ABID97_RS19240 0.39 -0.6
3,971,690 + ABID97_RS19240 0.40 -0.5
3,971,691 - ABID97_RS19240 0.40 +0.2
3,971,691 - ABID97_RS19240 0.40 +1.1
3,971,691 - ABID97_RS19240 0.40 +1.3
3,971,952 - +2.0
3,971,982 - ABID97_RS19240 0.66 -0.9
3,972,141 - ABID97_RS19240 0.80 +0.4
3,972,141 - ABID97_RS19240 0.80 +0.2
3,972,146 + ABID97_RS19240 0.81 +0.0
3,972,147 - ABID97_RS19240 0.81 +0.0
3,972,147 - ABID97_RS19240 0.81 +0.4
3,972,164 + ABID97_RS19240 0.82 +1.1
3,972,353 + +0.4
3,972,638 - ABID97_RS19245 0.12 +0.5
3,972,638 - ABID97_RS19245 0.12 -0.4
3,972,638 - ABID97_RS19245 0.12 +0.7
3,972,710 - ABID97_RS19245 0.21 +0.0
3,972,952 + ABID97_RS19245 0.50 +0.9
3,972,952 + ABID97_RS19245 0.50 +0.0
3,972,952 + ABID97_RS19245 0.50 -1.3
3,972,970 + ABID97_RS19245 0.52 -0.3
3,972,971 - ABID97_RS19245 0.52 +0.8
3,973,043 - ABID97_RS19245 0.61 +0.3

Or see this region's nucleotide sequence