Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19110

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19100 and ABID97_RS19105 overlap by 4 nucleotidesABID97_RS19105 and ABID97_RS19110 overlap by 8 nucleotidesABID97_RS19110 and ABID97_RS19115 are separated by 32 nucleotides ABID97_RS19100: ABID97_RS19100 - 4'-phosphopantetheinyl transferase superfamily protein, at 3,941,571 to 3,942,290 _RS19100 ABID97_RS19105: ABID97_RS19105 - alpha/beta hydrolase, at 3,942,287 to 3,943,105 _RS19105 ABID97_RS19110: ABID97_RS19110 - hypothetical protein, at 3,943,098 to 3,944,054 _RS19110 ABID97_RS19115: ABID97_RS19115 - polysaccharide biosynthesis/export family protein, at 3,944,087 to 3,945,280 _RS19115 Position (kb) 3943 3944 3945Strain fitness (log2 ratio) -1 0 1 2 3at 3943.899 kb on + strand, within ABID97_RS19110at 3943.900 kb on - strand, within ABID97_RS19110at 3943.900 kb on - strand, within ABID97_RS19110at 3944.040 kb on + strandat 3944.069 kb on - strandat 3944.834 kb on + strand, within ABID97_RS19115at 3944.835 kb on - strand, within ABID97_RS19115at 3944.942 kb on + strand, within ABID97_RS19115at 3944.943 kb on - strand, within ABID97_RS19115

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,943,899 + ABID97_RS19110 0.84 +2.2
3,943,900 - ABID97_RS19110 0.84 +0.4
3,943,900 - ABID97_RS19110 0.84 +3.2
3,944,040 + +1.6
3,944,069 - -1.5
3,944,834 + ABID97_RS19115 0.63 +0.6
3,944,835 - ABID97_RS19115 0.63 -0.6
3,944,942 + ABID97_RS19115 0.72 +0.3
3,944,943 - ABID97_RS19115 0.72 -0.3

Or see this region's nucleotide sequence