Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18680

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18670 and ABID97_RS18675 are separated by 114 nucleotidesABID97_RS18675 and ABID97_RS18680 are separated by 23 nucleotidesABID97_RS18680 and ABID97_RS18685 are separated by 232 nucleotides ABID97_RS18670: ABID97_RS18670 - hypothetical protein, at 3,847,911 to 3,848,504 _RS18670 ABID97_RS18675: ABID97_RS18675 - hypothetical protein, at 3,848,619 to 3,849,221 _RS18675 ABID97_RS18680: ABID97_RS18680 - NAD(P)H-quinone oxidoreductase, at 3,849,245 to 3,850,222 _RS18680 ABID97_RS18685: ABID97_RS18685 - tripartite tricarboxylate transporter substrate binding protein, at 3,850,455 to 3,851,414 _RS18685 Position (kb) 3849 3850 3851Strain fitness (log2 ratio) -2 -1 0 1at 3848.308 kb on - strand, within ABID97_RS18670at 3848.637 kb on - strandat 3848.637 kb on - strandat 3848.637 kb on - strandat 3848.712 kb on + strand, within ABID97_RS18675at 3848.806 kb on + strand, within ABID97_RS18675at 3848.856 kb on + strand, within ABID97_RS18675at 3849.395 kb on + strand, within ABID97_RS18680at 3849.533 kb on + strand, within ABID97_RS18680at 3849.715 kb on - strand, within ABID97_RS18680at 3849.992 kb on + strand, within ABID97_RS18680at 3850.055 kb on + strand, within ABID97_RS18680at 3850.056 kb on - strand, within ABID97_RS18680at 3850.516 kb on + strandat 3850.701 kb on + strand, within ABID97_RS18685at 3850.949 kb on - strand, within ABID97_RS18685at 3851.145 kb on - strand, within ABID97_RS18685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
3,848,308 - ABID97_RS18670 0.67 -0.5
3,848,637 - -0.8
3,848,637 - -0.4
3,848,637 - +0.2
3,848,712 + ABID97_RS18675 0.15 -0.2
3,848,806 + ABID97_RS18675 0.31 +0.9
3,848,856 + ABID97_RS18675 0.39 -1.6
3,849,395 + ABID97_RS18680 0.15 +0.8
3,849,533 + ABID97_RS18680 0.29 -0.7
3,849,715 - ABID97_RS18680 0.48 +0.1
3,849,992 + ABID97_RS18680 0.76 +0.6
3,850,055 + ABID97_RS18680 0.83 -0.1
3,850,056 - ABID97_RS18680 0.83 -1.4
3,850,516 + -0.3
3,850,701 + ABID97_RS18685 0.26 -0.1
3,850,949 - ABID97_RS18685 0.51 -1.9
3,851,145 - ABID97_RS18685 0.72 +1.6

Or see this region's nucleotide sequence