Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18670 and ABID97_RS18675 are separated by 114 nucleotides ABID97_RS18675 and ABID97_RS18680 are separated by 23 nucleotides ABID97_RS18680 and ABID97_RS18685 are separated by 232 nucleotides
ABID97_RS18670: ABID97_RS18670 - hypothetical protein, at 3,847,911 to 3,848,504
_RS18670
ABID97_RS18675: ABID97_RS18675 - hypothetical protein, at 3,848,619 to 3,849,221
_RS18675
ABID97_RS18680: ABID97_RS18680 - NAD(P)H-quinone oxidoreductase, at 3,849,245 to 3,850,222
_RS18680
ABID97_RS18685: ABID97_RS18685 - tripartite tricarboxylate transporter substrate binding protein, at 3,850,455 to 3,851,414
_RS18685
Position (kb)
3849
3850
3851 Strain fitness (log2 ratio)
-2
-1
0
1 at 3848.308 kb on - strand, within ABID97_RS18670 at 3848.637 kb on - strand at 3848.637 kb on - strand at 3848.637 kb on - strand at 3848.712 kb on + strand, within ABID97_RS18675 at 3848.806 kb on + strand, within ABID97_RS18675 at 3848.856 kb on + strand, within ABID97_RS18675 at 3849.395 kb on + strand, within ABID97_RS18680 at 3849.533 kb on + strand, within ABID97_RS18680 at 3849.715 kb on - strand, within ABID97_RS18680 at 3849.992 kb on + strand, within ABID97_RS18680 at 3850.055 kb on + strand, within ABID97_RS18680 at 3850.056 kb on - strand, within ABID97_RS18680 at 3850.516 kb on + strand at 3850.701 kb on + strand, within ABID97_RS18685 at 3850.949 kb on - strand, within ABID97_RS18685 at 3851.145 kb on - strand, within ABID97_RS18685
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,848,308 - ABID97_RS18670 0.67 -0.5 3,848,637 - -0.8 3,848,637 - -0.4 3,848,637 - +0.2 3,848,712 + ABID97_RS18675 0.15 -0.2 3,848,806 + ABID97_RS18675 0.31 +0.9 3,848,856 + ABID97_RS18675 0.39 -1.6 3,849,395 + ABID97_RS18680 0.15 +0.8 3,849,533 + ABID97_RS18680 0.29 -0.7 3,849,715 - ABID97_RS18680 0.48 +0.1 3,849,992 + ABID97_RS18680 0.76 +0.6 3,850,055 + ABID97_RS18680 0.83 -0.1 3,850,056 - ABID97_RS18680 0.83 -1.4 3,850,516 + -0.3 3,850,701 + ABID97_RS18685 0.26 -0.1 3,850,949 - ABID97_RS18685 0.51 -1.9 3,851,145 - ABID97_RS18685 0.72 +1.6
Or see this region's nucleotide sequence