Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17950

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17945 and ABID97_RS17950 are separated by 6 nucleotidesABID97_RS17950 and ABID97_RS17955 overlap by 4 nucleotidesABID97_RS17955 and ABID97_RS17960 overlap by 4 nucleotides ABID97_RS17945: ABID97_RS17945 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 3,708,806 to 3,709,960 _RS17945 ABID97_RS17950: ABID97_RS17950 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,709,967 to 3,710,434 _RS17950 ABID97_RS17955: ABID97_RS17955 - transcription antitermination factor NusB, at 3,710,431 to 3,710,967 _RS17955 ABID97_RS17960: ABID97_RS17960 - pyridoxal phosphate-dependent aminotransferase, at 3,710,964 to 3,712,160 _RS17960 Position (kb) 3709 3710 3711Strain fitness (log2 ratio) -3 -2 -1 0 1at 3709.829 kb on + strand, within ABID97_RS17945at 3709.922 kb on + strandat 3711.003 kb on + strandat 3711.003 kb on + strandat 3711.003 kb on + strandat 3711.003 kb on + strandat 3711.003 kb on + strandat 3711.004 kb on - strandat 3711.004 kb on - strandat 3711.004 kb on - strandat 3711.004 kb on - strandat 3711.004 kb on - strandat 3711.004 kb on - strandat 3711.162 kb on + strand, within ABID97_RS17960at 3711.346 kb on - strand, within ABID97_RS17960at 3711.346 kb on - strand, within ABID97_RS17960

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,709,829 + ABID97_RS17945 0.89 +0.2
3,709,922 + +0.0
3,711,003 + -0.4
3,711,003 + -1.0
3,711,003 + -0.9
3,711,003 + -0.8
3,711,003 + -1.2
3,711,004 - -1.6
3,711,004 - -1.9
3,711,004 - -0.2
3,711,004 - -1.5
3,711,004 - -1.8
3,711,004 - -1.4
3,711,162 + ABID97_RS17960 0.17 -1.2
3,711,346 - ABID97_RS17960 0.32 -0.5
3,711,346 - ABID97_RS17960 0.32 -2.8

Or see this region's nucleotide sequence