Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17830 and ABID97_RS17835 are separated by 11 nucleotides ABID97_RS17835 and ABID97_RS17840 are separated by 16 nucleotides ABID97_RS17840 and ABID97_RS17845 are separated by 17 nucleotides
ABID97_RS17830: ABID97_RS17830 - tRNA lysidine(34) synthetase TilS, at 3,681,691 to 3,682,668
_RS17830
ABID97_RS17835: ABID97_RS17835 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 3,682,680 to 3,683,660
_RS17835
ABID97_RS17840: ABID97_RS17840 - DNA-3-methyladenine glycosylase 2 family protein, at 3,683,677 to 3,684,327
_RS17840
ABID97_RS17845: ABID97_RS17845 - cysteine--tRNA ligase, at 3,684,345 to 3,685,721
_RS17845
Position (kb)
3682
3683
3684 Strain fitness (log2 ratio)
-1
0
1
2 at 3681.720 kb on - strand at 3681.720 kb on - strand at 3681.726 kb on - strand at 3682.681 kb on + strand at 3682.681 kb on + strand at 3683.716 kb on - strand at 3683.716 kb on - strand at 3683.717 kb on + strand at 3683.717 kb on + strand at 3683.717 kb on + strand at 3683.718 kb on - strand at 3683.718 kb on - strand at 3683.718 kb on - strand at 3684.011 kb on + strand, within ABID97_RS17840 at 3684.012 kb on - strand, within ABID97_RS17840 at 3684.293 kb on + strand at 3684.293 kb on + strand at 3684.293 kb on + strand at 3684.293 kb on + strand at 3684.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,681,720 - +0.4 3,681,720 - -0.7 3,681,726 - -0.0 3,682,681 + +0.1 3,682,681 + +0.1 3,683,716 - -0.0 3,683,716 - -0.8 3,683,717 + +0.5 3,683,717 + +0.8 3,683,717 + +0.2 3,683,718 - -1.3 3,683,718 - -0.0 3,683,718 - +0.3 3,684,011 + ABID97_RS17840 0.51 +0.9 3,684,012 - ABID97_RS17840 0.51 +0.8 3,684,293 + +0.3 3,684,293 + +2.0 3,684,293 + -1.3 3,684,293 + +0.0 3,684,294 - +0.0
Or see this region's nucleotide sequence