Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17825

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17810 and ABID97_RS17815 are separated by 78 nucleotidesABID97_RS17815 and ABID97_RS17820 overlap by 33 nucleotidesABID97_RS17820 and ABID97_RS17825 are separated by 26 nucleotidesABID97_RS17825 and ABID97_RS17830 are separated by 67 nucleotides ABID97_RS17810: ABID97_RS17810 - hypothetical protein, at 3,679,069 to 3,679,818 _RS17810 ABID97_RS17815: ABID97_RS17815 - hypothetical protein, at 3,679,897 to 3,680,268 _RS17815 ABID97_RS17820: ABID97_RS17820 - tRNA-Ser, at 3,680,236 to 3,680,328 _RS17820 ABID97_RS17825: ABID97_RS17825 - aspartate kinase, at 3,680,355 to 3,681,623 _RS17825 ABID97_RS17830: ABID97_RS17830 - tRNA lysidine(34) synthetase TilS, at 3,681,691 to 3,682,668 _RS17830 Position (kb) 3680 3681 3682Strain fitness (log2 ratio) -1 0 1at 3679.363 kb on + strand, within ABID97_RS17810at 3679.372 kb on - strand, within ABID97_RS17810at 3679.372 kb on - strand, within ABID97_RS17810at 3679.509 kb on + strand, within ABID97_RS17810at 3679.509 kb on + strand, within ABID97_RS17810at 3679.510 kb on - strand, within ABID97_RS17810at 3679.569 kb on + strand, within ABID97_RS17810at 3679.570 kb on - strand, within ABID97_RS17810at 3679.593 kb on + strand, within ABID97_RS17810at 3679.836 kb on - strandat 3679.967 kb on + strand, within ABID97_RS17815at 3681.720 kb on - strandat 3681.720 kb on - strandat 3681.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,679,363 + ABID97_RS17810 0.39 -0.2
3,679,372 - ABID97_RS17810 0.40 -0.8
3,679,372 - ABID97_RS17810 0.40 +0.3
3,679,509 + ABID97_RS17810 0.59 +0.3
3,679,509 + ABID97_RS17810 0.59 +0.1
3,679,510 - ABID97_RS17810 0.59 +0.6
3,679,569 + ABID97_RS17810 0.67 -0.7
3,679,570 - ABID97_RS17810 0.67 -1.0
3,679,593 + ABID97_RS17810 0.70 +0.3
3,679,836 - -0.0
3,679,967 + ABID97_RS17815 0.19 -1.6
3,681,720 - +0.4
3,681,720 - -0.7
3,681,726 - -0.0

Or see this region's nucleotide sequence