Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17810 and ABID97_RS17815 are separated by 78 nucleotides ABID97_RS17815 and ABID97_RS17820 overlap by 33 nucleotides ABID97_RS17820 and ABID97_RS17825 are separated by 26 nucleotides ABID97_RS17825 and ABID97_RS17830 are separated by 67 nucleotides
ABID97_RS17810: ABID97_RS17810 - hypothetical protein, at 3,679,069 to 3,679,818
_RS17810
ABID97_RS17815: ABID97_RS17815 - hypothetical protein, at 3,679,897 to 3,680,268
_RS17815
ABID97_RS17820: ABID97_RS17820 - tRNA-Ser, at 3,680,236 to 3,680,328
_RS17820
ABID97_RS17825: ABID97_RS17825 - aspartate kinase, at 3,680,355 to 3,681,623
_RS17825
ABID97_RS17830: ABID97_RS17830 - tRNA lysidine(34) synthetase TilS, at 3,681,691 to 3,682,668
_RS17830
Position (kb)
3680
3681
3682 Strain fitness (log2 ratio)
-1
0
1 at 3679.363 kb on + strand, within ABID97_RS17810 at 3679.372 kb on - strand, within ABID97_RS17810 at 3679.372 kb on - strand, within ABID97_RS17810 at 3679.509 kb on + strand, within ABID97_RS17810 at 3679.509 kb on + strand, within ABID97_RS17810 at 3679.510 kb on - strand, within ABID97_RS17810 at 3679.569 kb on + strand, within ABID97_RS17810 at 3679.570 kb on - strand, within ABID97_RS17810 at 3679.593 kb on + strand, within ABID97_RS17810 at 3679.836 kb on - strand at 3679.967 kb on + strand, within ABID97_RS17815 at 3681.720 kb on - strand at 3681.720 kb on - strand at 3681.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,679,363 + ABID97_RS17810 0.39 -0.2 3,679,372 - ABID97_RS17810 0.40 -0.8 3,679,372 - ABID97_RS17810 0.40 +0.3 3,679,509 + ABID97_RS17810 0.59 +0.3 3,679,509 + ABID97_RS17810 0.59 +0.1 3,679,510 - ABID97_RS17810 0.59 +0.6 3,679,569 + ABID97_RS17810 0.67 -0.7 3,679,570 - ABID97_RS17810 0.67 -1.0 3,679,593 + ABID97_RS17810 0.70 +0.3 3,679,836 - -0.0 3,679,967 + ABID97_RS17815 0.19 -1.6 3,681,720 - +0.4 3,681,720 - -0.7 3,681,726 - -0.0
Or see this region's nucleotide sequence