Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16765

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS16755 and ABID97_RS16760 overlap by 34 nucleotidesABID97_RS16760 and ABID97_RS16765 are separated by 13 nucleotidesABID97_RS16765 and ABID97_RS16770 overlap by 4 nucleotidesABID97_RS16770 and ABID97_RS16775 overlap by 4 nucleotides ABID97_RS16755: ABID97_RS16755 - lysophospholipid acyltransferase family protein, at 3,466,388 to 3,467,185 _RS16755 ABID97_RS16760: ABID97_RS16760 - glycosyltransferase family 2 protein, at 3,467,152 to 3,467,928 _RS16760 ABID97_RS16765: ABID97_RS16765 - 3-oxoacyl-ACP reductase FabG, at 3,467,942 to 3,468,673 _RS16765 ABID97_RS16770: ABID97_RS16770 - hydroxymyristoyl-ACP dehydratase, at 3,468,670 to 3,469,143 _RS16770 ABID97_RS16775: ABID97_RS16775 - class I SAM-dependent methyltransferase, at 3,469,140 to 3,469,904 _RS16775 Position (kb) 3467 3468 3469Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3467.106 kb on - strandat 3467.194 kb on + strandat 3467.194 kb on + strandat 3467.195 kb on - strandat 3467.195 kb on - strandat 3467.195 kb on - strandat 3467.195 kb on - strandat 3467.336 kb on + strand, within ABID97_RS16760at 3467.337 kb on - strand, within ABID97_RS16760at 3467.624 kb on - strand, within ABID97_RS16760at 3467.943 kb on + strandat 3467.943 kb on + strandat 3467.943 kb on + strandat 3467.985 kb on + strandat 3467.985 kb on + strandat 3467.986 kb on - strandat 3468.213 kb on + strand, within ABID97_RS16765at 3468.213 kb on + strand, within ABID97_RS16765at 3468.213 kb on + strand, within ABID97_RS16765at 3468.213 kb on + strand, within ABID97_RS16765at 3468.214 kb on - strand, within ABID97_RS16765at 3468.214 kb on - strand, within ABID97_RS16765at 3468.214 kb on - strand, within ABID97_RS16765at 3468.214 kb on - strand, within ABID97_RS16765at 3468.214 kb on - strand, within ABID97_RS16765at 3468.214 kb on - strand, within ABID97_RS16765at 3468.709 kb on + strandat 3468.950 kb on + strand, within ABID97_RS16770at 3469.456 kb on + strand, within ABID97_RS16775at 3469.456 kb on + strand, within ABID97_RS16775at 3469.456 kb on + strand, within ABID97_RS16775at 3469.456 kb on + strand, within ABID97_RS16775at 3469.457 kb on - strand, within ABID97_RS16775at 3469.457 kb on - strand, within ABID97_RS16775at 3469.457 kb on - strand, within ABID97_RS16775at 3469.606 kb on + strand, within ABID97_RS16775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
3,467,106 - -0.0
3,467,194 + +0.0
3,467,194 + -0.3
3,467,195 - -0.3
3,467,195 - +0.1
3,467,195 - -0.1
3,467,195 - +0.9
3,467,336 + ABID97_RS16760 0.24 +0.1
3,467,337 - ABID97_RS16760 0.24 -0.6
3,467,624 - ABID97_RS16760 0.61 -1.8
3,467,943 + +2.0
3,467,943 + -0.4
3,467,943 + +0.7
3,467,985 + -1.2
3,467,985 + -1.3
3,467,986 - +0.0
3,468,213 + ABID97_RS16765 0.37 -0.0
3,468,213 + ABID97_RS16765 0.37 +0.0
3,468,213 + ABID97_RS16765 0.37 -1.0
3,468,213 + ABID97_RS16765 0.37 +0.2
3,468,214 - ABID97_RS16765 0.37 +0.1
3,468,214 - ABID97_RS16765 0.37 -0.2
3,468,214 - ABID97_RS16765 0.37 +0.1
3,468,214 - ABID97_RS16765 0.37 -1.0
3,468,214 - ABID97_RS16765 0.37 -1.3
3,468,214 - ABID97_RS16765 0.37 -1.0
3,468,709 + +0.2
3,468,950 + ABID97_RS16770 0.59 -0.5
3,469,456 + ABID97_RS16775 0.41 -1.1
3,469,456 + ABID97_RS16775 0.41 -0.4
3,469,456 + ABID97_RS16775 0.41 -0.4
3,469,456 + ABID97_RS16775 0.41 -3.8
3,469,457 - ABID97_RS16775 0.41 -0.1
3,469,457 - ABID97_RS16775 0.41 +0.1
3,469,457 - ABID97_RS16775 0.41 -0.1
3,469,606 + ABID97_RS16775 0.61 -1.4

Or see this region's nucleotide sequence