Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16190 and ABID97_RS16195 overlap by 4 nucleotides ABID97_RS16195 and ABID97_RS16200 overlap by 4 nucleotides ABID97_RS16200 and ABID97_RS16205 are separated by 37 nucleotides ABID97_RS16205 and ABID97_RS16210 are separated by 18 nucleotides ABID97_RS16210 and ABID97_RS16215 are separated by 17 nucleotides
ABID97_RS16190: ABID97_RS16190 - oxygen-independent coproporphyrinogen III oxidase, at 3,352,696 to 3,354,117
_RS16190
ABID97_RS16195: ABID97_RS16195 - hypothetical protein, at 3,354,114 to 3,354,365
_RS16195
ABID97_RS16200: ABID97_RS16200 - FixH family protein, at 3,354,362 to 3,354,634
_RS16200
ABID97_RS16205: ABID97_RS16205 - cytochrome c oxidase accessory protein CcoG, at 3,354,672 to 3,356,132
_RS16205
ABID97_RS16210: ABID97_RS16210 - cytochrome-c oxidase, cbb3-type subunit III, at 3,356,151 to 3,357,062
_RS16210
ABID97_RS16215: ABID97_RS16215 - CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone, at 3,357,080 to 3,357,220
_RS16215
Position (kb)
3354
3355
3356
3357 Strain fitness (log2 ratio)
-1
0
1 at 3353.804 kb on + strand, within ABID97_RS16190 at 3353.864 kb on + strand, within ABID97_RS16190 at 3353.867 kb on + strand, within ABID97_RS16190 at 3353.900 kb on + strand, within ABID97_RS16190 at 3354.006 kb on - strand at 3354.014 kb on + strand at 3354.220 kb on + strand, within ABID97_RS16195 at 3354.221 kb on - strand, within ABID97_RS16195 at 3354.638 kb on + strand at 3354.883 kb on + strand, within ABID97_RS16205 at 3355.430 kb on - strand, within ABID97_RS16205 at 3355.430 kb on - strand, within ABID97_RS16205 at 3355.564 kb on + strand, within ABID97_RS16205 at 3355.565 kb on - strand, within ABID97_RS16205 at 3355.729 kb on + strand, within ABID97_RS16205 at 3355.729 kb on + strand, within ABID97_RS16205 at 3355.829 kb on - strand, within ABID97_RS16205 at 3356.008 kb on + strand at 3356.009 kb on - strand at 3356.188 kb on + strand at 3356.293 kb on + strand, within ABID97_RS16210 at 3356.449 kb on + strand, within ABID97_RS16210 at 3357.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,353,804 + ABID97_RS16190 0.78 +0.4 3,353,864 + ABID97_RS16190 0.82 +0.0 3,353,867 + ABID97_RS16190 0.82 +0.1 3,353,900 + ABID97_RS16190 0.85 -0.3 3,354,006 - -0.8 3,354,014 + -0.6 3,354,220 + ABID97_RS16195 0.42 -0.8 3,354,221 - ABID97_RS16195 0.42 -0.9 3,354,638 + -0.9 3,354,883 + ABID97_RS16205 0.14 +0.4 3,355,430 - ABID97_RS16205 0.52 +0.1 3,355,430 - ABID97_RS16205 0.52 -0.1 3,355,564 + ABID97_RS16205 0.61 +0.3 3,355,565 - ABID97_RS16205 0.61 -0.5 3,355,729 + ABID97_RS16205 0.72 -0.0 3,355,729 + ABID97_RS16205 0.72 +1.0 3,355,829 - ABID97_RS16205 0.79 +0.2 3,356,008 + +0.1 3,356,009 - +0.2 3,356,188 + +0.2 3,356,293 + ABID97_RS16210 0.16 -0.4 3,356,449 + ABID97_RS16210 0.33 +0.1 3,357,029 - +0.0
Or see this region's nucleotide sequence