Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16195

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16190 and ABID97_RS16195 overlap by 4 nucleotidesABID97_RS16195 and ABID97_RS16200 overlap by 4 nucleotidesABID97_RS16200 and ABID97_RS16205 are separated by 37 nucleotides ABID97_RS16190: ABID97_RS16190 - oxygen-independent coproporphyrinogen III oxidase, at 3,352,696 to 3,354,117 _RS16190 ABID97_RS16195: ABID97_RS16195 - hypothetical protein, at 3,354,114 to 3,354,365 _RS16195 ABID97_RS16200: ABID97_RS16200 - FixH family protein, at 3,354,362 to 3,354,634 _RS16200 ABID97_RS16205: ABID97_RS16205 - cytochrome c oxidase accessory protein CcoG, at 3,354,672 to 3,356,132 _RS16205 Position (kb) 3354 3355Strain fitness (log2 ratio) -1 0 1at 3353.214 kb on - strand, within ABID97_RS16190at 3353.339 kb on + strand, within ABID97_RS16190at 3353.345 kb on + strand, within ABID97_RS16190at 3353.804 kb on + strand, within ABID97_RS16190at 3353.864 kb on + strand, within ABID97_RS16190at 3353.867 kb on + strand, within ABID97_RS16190at 3353.900 kb on + strand, within ABID97_RS16190at 3353.901 kb on - strand, within ABID97_RS16190at 3354.006 kb on - strandat 3354.014 kb on + strandat 3354.220 kb on + strand, within ABID97_RS16195at 3354.221 kb on - strand, within ABID97_RS16195at 3354.638 kb on + strandat 3354.883 kb on + strand, within ABID97_RS16205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,353,214 - ABID97_RS16190 0.36 -0.5
3,353,339 + ABID97_RS16190 0.45 +0.5
3,353,345 + ABID97_RS16190 0.46 +0.3
3,353,804 + ABID97_RS16190 0.78 +0.4
3,353,864 + ABID97_RS16190 0.82 +0.0
3,353,867 + ABID97_RS16190 0.82 +0.1
3,353,900 + ABID97_RS16190 0.85 -0.3
3,353,901 - ABID97_RS16190 0.85 +1.1
3,354,006 - -0.8
3,354,014 + -0.6
3,354,220 + ABID97_RS16195 0.42 -0.8
3,354,221 - ABID97_RS16195 0.42 -0.9
3,354,638 + -0.9
3,354,883 + ABID97_RS16205 0.14 +0.4

Or see this region's nucleotide sequence