Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14005

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13995 and ABID97_RS14000 are separated by 233 nucleotidesABID97_RS14000 and ABID97_RS14005 are separated by 88 nucleotidesABID97_RS14005 and ABID97_RS14010 are separated by 60 nucleotidesABID97_RS14010 and ABID97_RS14015 are separated by 1 nucleotidesABID97_RS14015 and ABID97_RS14020 are separated by 63 nucleotides ABID97_RS13995: ABID97_RS13995 - excinuclease ABC subunit UvrB, at 2,907,057 to 2,909,174 _RS13995 ABID97_RS14000: ABID97_RS14000 - Fe-S cluster assembly transcriptional regulator IscR, at 2,909,408 to 2,909,944 _RS14000 ABID97_RS14005: ABID97_RS14005 - IscS subfamily cysteine desulfurase, at 2,910,033 to 2,911,253 _RS14005 ABID97_RS14010: ABID97_RS14010 - Fe-S cluster assembly scaffold IscU, at 2,911,314 to 2,911,730 _RS14010 ABID97_RS14015: ABID97_RS14015 - iron-sulfur cluster assembly protein IscA, at 2,911,732 to 2,912,055 _RS14015 ABID97_RS14020: ABID97_RS14020 - Fe-S protein assembly co-chaperone HscB, at 2,912,119 to 2,912,637 _RS14020 Position (kb) 2910 2911 2912Strain fitness (log2 ratio) -1 0 1 2 3at 2909.172 kb on + strandat 2909.243 kb on + strandat 2909.244 kb on - strandat 2909.386 kb on + strandat 2909.998 kb on + strandat 2911.308 kb on + strandat 2911.308 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,909,172 + -0.4
2,909,243 + +0.4
2,909,244 - +3.2
2,909,386 + +0.2
2,909,998 + -0.6
2,911,308 + -1.2
2,911,308 + -0.7

Or see this region's nucleotide sequence