Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13165

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13160 and ABID97_RS13165 are separated by 33 nucleotidesABID97_RS13165 and ABID97_RS13170 are separated by 43 nucleotidesABID97_RS13170 and ABID97_RS13175 are separated by 1 nucleotides ABID97_RS13160: ABID97_RS13160 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,741,829 to 2,742,926 _RS13160 ABID97_RS13165: ABID97_RS13165 - PDR/VanB family oxidoreductase, at 2,742,960 to 2,743,916 _RS13165 ABID97_RS13170: ABID97_RS13170 - ABC transporter ATP-binding protein, at 2,743,960 to 2,744,673 _RS13170 ABID97_RS13175: ABID97_RS13175 - ABC transporter ATP-binding protein, at 2,744,675 to 2,745,415 _RS13175 Position (kb) 2742 2743 2744Strain fitness (log2 ratio) -1 0 1 2at 2741.963 kb on - strand, within ABID97_RS13160at 2742.392 kb on - strand, within ABID97_RS13160at 2742.476 kb on - strand, within ABID97_RS13160at 2742.584 kb on - strand, within ABID97_RS13160at 2742.851 kb on - strandat 2743.262 kb on - strand, within ABID97_RS13165at 2743.348 kb on + strand, within ABID97_RS13165at 2743.348 kb on + strand, within ABID97_RS13165at 2743.349 kb on - strand, within ABID97_RS13165at 2743.502 kb on - strand, within ABID97_RS13165at 2743.760 kb on - strand, within ABID97_RS13165at 2743.760 kb on - strand, within ABID97_RS13165at 2744.423 kb on + strand, within ABID97_RS13170at 2744.423 kb on + strand, within ABID97_RS13170at 2744.789 kb on + strand, within ABID97_RS13175at 2744.790 kb on - strand, within ABID97_RS13175at 2744.790 kb on - strand, within ABID97_RS13175at 2744.790 kb on - strand, within ABID97_RS13175at 2744.819 kb on + strand, within ABID97_RS13175

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,741,963 - ABID97_RS13160 0.12 +0.4
2,742,392 - ABID97_RS13160 0.51 -0.7
2,742,476 - ABID97_RS13160 0.59 -0.6
2,742,584 - ABID97_RS13160 0.69 -0.7
2,742,851 - -1.5
2,743,262 - ABID97_RS13165 0.32 +1.9
2,743,348 + ABID97_RS13165 0.41 -0.4
2,743,348 + ABID97_RS13165 0.41 +0.4
2,743,349 - ABID97_RS13165 0.41 +1.8
2,743,502 - ABID97_RS13165 0.57 -0.4
2,743,760 - ABID97_RS13165 0.84 +1.0
2,743,760 - ABID97_RS13165 0.84 +0.1
2,744,423 + ABID97_RS13170 0.65 -0.5
2,744,423 + ABID97_RS13170 0.65 -0.3
2,744,789 + ABID97_RS13175 0.15 -0.3
2,744,790 - ABID97_RS13175 0.16 -0.7
2,744,790 - ABID97_RS13175 0.16 +0.5
2,744,790 - ABID97_RS13175 0.16 +1.8
2,744,819 + ABID97_RS13175 0.19 -0.0

Or see this region's nucleotide sequence